Query= MSMg01no125_d20.b1 MSMg01no125_d20.b1 CHROMAT_FILE:
MSMg01no125_d20.b1 PHD_FILE: MSMg01no125_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:13 2005
(570 letters)
>mm_chr1_4912699_4913668
Length = 970
Score = 1004 bits (519), Expect = 0.0
Identities = 555/567 (97%)
Strand = Plus / Plus
Query: 4 gaattcaggggctctgtccaacctcctgcctcagccttccaagtagctgggataataatt 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaggggctcagtcaaacctcctgcctcagccttccaagtagctgggataataatt 263
Query: 64 ttatacaccctgtctagccttgcttttcatttcaaggtagatttgtatataatacacata 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttatacaccctgtctagcctttcttttcatttcaaggtagatttgtatataatacacata 323
Query: 124 taatgaatatacatatatatcttctatatttggataccagtgggtgaaggctcttattcc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatgaatatacatatatatcttctatatttggataccagtgggtgaaggctcttattct 383
Query: 184 ggaaccttagtttgatccctggaacccacataactgtggaaggagagaatcaacaccaga 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 ggaaccttagtttgatccctggaacccatgtaactgtggaaggagagaatcaacaccagg 443
Query: 244 ggtttttttctgacttctacacatgggctatgccacataagcccacatgtacacatcaca 303
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 444 ggtttttttctgacttctacacatgggctatgccacacaagcccacatgcacacatcaca 503
Query: 304 tgtgagcgacgcaacctacatacagtaaggaccatgatagacttgaaatttctaagtgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgagcgacgcaacctacatacagtaaggaccatgatagacttgaaatttctaagtgat 563
Query: 364 accaagtttggctggcactaagcctaaacttacactcaagcctctgtgtctctcacatcc 423
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 564 accaagtttggctggcactaagcctaagcttacactcaagcctgtgtgtctctcacatcc 623
Query: 424 atccttctggatttctctttactaagcaaagcggactatatgttttcaaaatttctgtct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atccttctggatttctctttactaagcaaagcggactatatgttttcaaaatttctgtct 683
Query: 484 ctattttaagtacatagtttgtcatttatctttatcaaaaaccaaaattagcaacatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 684 ctattttaagtacatagtttgtcatttatctttatcaaaaaccaaaattagcaacgtgaa 743
Query: 544 agcaaaagctgttaaaaatctaggctt 570
|||||||||||||||||||||||||||
Sbjct: 744 agcaaaagctgttaaaaatctaggctt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_d20.g1 MSMg01no125_d20.g1 CHROMAT_FILE:
MSMg01no125_d20.g1 PHD_FILE: MSMg01no125_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:13 2005
(472 letters)
>mm_chr1_5054450_5055316
Length = 867
Score = 862 bits (446), Expect = 0.0
Identities = 464/472 (98%), Gaps = 5/472 (1%)
Strand = Plus / Minus
Query: 1 tcttcttagtacacaatcattctctccacagaaaggcaattttgaacttctcatctggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcttcttagtacacaatcattctctccacagaaaggcaattttgaacttctcatctggtg 608
Query: 61 acatgagaacagtagcaatgtctccgtgacttaagctgaaagcaggacactgatatatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 acatgagaacagtagcaatgtctccgtgacttaagctgaaagcaggacactgatatatgg 548
Query: 121 ctcttacacccagtattgggaatatacaaatgctttatttaaaactacaaaataaattgt 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 547 ctcttacacccagtattgggaatatacaaatgctttatttaaaagtacaaaataaattat 488
Query: 181 ctgtaaggatggacaagagcagaaaaccattatacattgtcaatagaaaccagtaactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctgtaaggatggacaagagcagaaaaccattatacattgtcaatagaaaccagtaactga 428
Query: 241 tagttatagtgatcagccagccagcctcctctttagtaatcttttgcagatgacttctct 300
||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct: 427 tagttatagtgatcagccagccagcctcctcttcagtaatcttttgcag--g---tctct 373
Query: 301 gaagtcatcaacgaggaacctgccttgagcttccccttcacagttcattgagaaggacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaagtcatcaacgaggaacctgccttgagcttccccttcacagttcattgagaaggacaa 313
Query: 361 agctcctctattctcagagctagaacatgccaccacccacaccttccacctattgtcacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agctcctctattctcagagctagaacatgccaccacccacaccttccacctattgtcacc 253
Query: 421 ttctcttctgtaggaatctatgacactgcaatttctgctgtagttaacaagc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttctcttctgtaggaatctatgacactgcaatttctgctgtagttaacaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 867
Length adjustment: 10
Effective length of query: 462
Effective length of database: 857
Effective search space: 395934
Effective search space used: 395934
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
