BAC Information

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BAC

Clone NameMSMg01-125I06
Chromosome1 (Build37)
Map Location 107,803,637 - 107,804,033
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream geneEG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125I06.T7 (MSMg01no125_i06.b1)MSMg01-125I06.TJ (MSMg01no125_i06.g1)
ACCAG334585AG334586
length694728
length of high quality
(start - end)
539 (62 - 600)401 (78 - 478)
definitionCHROMAT_FILE: MSMg01no125_i06.b1 PHD_FILE: MSMg01no125_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:35 2005CHROMAT_FILE: MSMg01no125_i06.g1 PHD_FILE: MSMg01no125_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCCTATAGTCCGAGAATCCGCGGAATTCAAATA
GAGAGAGCAAAAAAATCCTTGGCTGCTTTCTGTGCTATGGTGTTCCTACA
TTTATGTTTCATTACAATTTAAAAAGAAAAAAAAAGCATAAAAACCAGGC
CACAGGCTGGGGGAAAATATGCACAAAATATGTATCATATAAAGACTGGT
ACTCAAAATACTACAAGAACTCACCAGTAAGAAAATAACTCTCAGGCTCA
TGAGTGGGAAAAGACTTGCTGAGCTCCTTACCAAGCTTTAGTACTGGAAC
ATACAAGGAAGGAGAAGGCAGCTCCCACAAATTATCCGCTGGCATGTGCA
CCCCCTCCCACAATAAATGTAATAATTTTTTTAAAAAAAATGAGAAAGAA
CACCTAATCAAAACTCAATTTAAAAAGTCGGCAGAAAGATAAGTTCACCT
CACCAAAGATGGTAAATTAGTATACGAAAAGATGTGTAACTTTGTGTACC
CCTGGGGAAAGCAAAAACTCAGACAGCCATGGAATGCAATCACAAACCTG
CTAGAGTGGTTCCGATCCACACTGACATCATCTACTGCTACCAAGGATGC
AGAGCCACAGGAACTCTCAGACAGTGCCAGTGTGCACCCAGAATGGCACG
GGTGCTTTGGGAGGTGATTTATAGACTTACAGGATCCAGCCGTG
TTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCATAGGTTTGGTAGCAAAC
ATCTTTATTCTTCAGTTGTTTACAACAAAATTAGTTAATTAAAAATGACC
AGCATTTCCTATCCAAATTTGTTTTTTATGGTTATCTTCTTCTGACTCAA
ATAAAAGGAGAGGATGGAGAACACTTGTCTTCCCAGGGCCAGGGCCTGGC
TTCCAGTTCTGCAGTTCAGACGCCAACATGATAGTGCCGTGAGAATATTT
ATTGTCAGTGTTGCGTTTTATAAAAAGAAAGAGACCAGAGATATGTTTGG
TGGAGGCAAGGCATGGTGTAGGGGAAGAAGGTGCCTCTGTGGGGCCAACG
CTGAGCCATCCCTTCCCCCTGAGGTACCAGCCAAGTATGGTATAGAATAG
AGTTGGGGTAGGAGGGGGGGCAGGCATGAGCACGTGGAGAGAGAGGGGGA
GGGTAATGAGGAGAGGGGAGGGTGTATATCCTCCTACTCCTTCTTTTTCA
TCATTCTTACTCTTACTTCTCTCCCCTAACCCTTTCTCCTTTTCTCCCTT
CCCTTCCCATTTTCAATCTATTCTTTTCTCATTATTACCCCCTTCTCATA
CCGCCCCCCTTTCCCCCCCCCTGTCCTCTTCTCACCCTTACCTCTCCATT
TTCATTCCTTCCTTCCTCTTTCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_i06.g1 MSMg01no125_i06.g1 CHROMAT_FILE:
MSMg01no125_i06.g1 PHD_FILE: MSMg01no125_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:35 2005
         (401 letters)



>mm_chr1_107803437_107804235
          Length = 799

 Score =  688 bits (356), Expect = 0.0
 Identities = 389/402 (96%), Gaps = 6/402 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcataggtttggtagcaaacatctttattcttcagttgtttacaacaaaattagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 aggtcataggtttggtagcaaacatctttattcttcagttgtttacaacaaaattagttg 260

                                                                       
Query: 61  attaaaaatgaccagcatttcctatccaaatttgttttttatggttatcttcttctgact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 attaaaaatgaccagcatttcctatccaaatttgttttttatggttatcttcttttgact 320

                                                                       
Query: 121 caaataaaaggagaggatggagaacacttgtcttcccagggccagggcctggcttccagt 180
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaataaaa--agaggatggagaacacttgtcttcccagggccagggcctggcttccagt 378

                                                                       
Query: 181 tctgcagttcagacgccaacatgatagtgccgtgagaatatttattgtcagtgttgcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctgcagttcagacgccaacatgatagtgccgtgagaatatttattgtcagtgttgcgtt 438

                                                                       
Query: 241 ttataaaaagaaagagaccagagatatgtttggtggaggcaaggcatggtgtaggggaag 300
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 439 ttataaaaagaaagagaccagagatacgtttggtggaggcaagccatggtgtaggggaag 498

                                                                       
Query: 301 aaggtgcctctgtggggccaacgctgagccatcccttccccc-tgaggtaccagccaagt 359
           |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 499 aaggtgcctctgcggggccaacgctgaggcatcccttcccccctgaggtaccagccaagt 558

                                                     
Query: 360 atggtatagaatagagttggggtaggagggggggcaggcatg 401
           ||||||||||||||||||||||||||   | |||||||||||
Sbjct: 559 atggtatagaatagagttggggtagg---gagggcaggcatg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 799
Length adjustment: 9
Effective length of query: 392
Effective length of database: 790
Effective search space:   309680
Effective search space used:   309680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)