Query= MSMg01no125_j11.b1 MSMg01no125_j11.b1 CHROMAT_FILE:
MSMg01no125_j11.b1 PHD_FILE: MSMg01no125_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:41 2005
(581 letters)
>mm_chr1_108072727_108073714
Length = 988
Score = 1023 bits (529), Expect = 0.0
Identities = 570/587 (97%), Gaps = 9/587 (1%)
Strand = Plus / Plus
Query: 3 ggaattcagttacctga-cttaagttatgaatacctagcatgaatgagctgttttgttca 61
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcagttacctgatc-taagttatgaatacctagcatgaatgagctgttttgttca 261
Query: 62 ggactccctggggcatttgtgtcatagggcagtagtataaagtcttacataaattttttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggactccctggggcatttgtgtcatagggcagtagtataaagtcttacataaattttttt 321
Query: 122 cgttacctattactttagctacagttgcctgcttagttcaaatcatagcaacaagaaaga 181
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccttacctattactttagctacagttgcctgcttagttcaaatcatagcaacaagaaaga 381
Query: 182 gtgttaccagacaggagaacacacctcgcacctagtgtattttggaaggtgtgtttatgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgttaccagacaggagaacacacctcgcacctagtgtattttggaaggtgtgtttatgt 441
Query: 242 gggcttctgtggtagtcagccagctttccttccctcatttctaccctctttctcttctgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggcttctgtggtagtcagccagctttccttccctcatttctaccctctttctcttctgg 501
Query: 302 aaatgctcagtccttacatgatctcgtaccaaaatgggtggttatcttcaacatcgtact 361
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 502 aaatgctcagtccttacatgatctcgtacaaaaatgggtggttatcttcaacatcatact 561
Query: 362 tattgataagcaggttcttattactgtaattacagtagtaccgagtag-----tatagtt 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 tattgataagcaggttcttattactgtaattacagtagtaccgagtagagtagtatagtt 621
Query: 417 tgaatatgttactccagtgtgagcttcaatagtgctttgaaagtacaaaggattttactt 476
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 622 tgaatatgttactccagtgtgagcttcaacagtgctttgaaagtacaaaggattttactt 681
Query: 477 gattttgttgtttttt--gtgcttaacactttgttatgctcatatatttgttcttttttc 534
|||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 682 gattttgttgttttttttgtgcctaacactttgttatgttcatatatttgttcttttttc 741
Query: 535 acatgaagcatgtgaatctcttgactatggcttgataactcccatac 581
||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 742 acatgaagcatgtgaatcttttgactatggcttgctaactcccatac 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 988
Length adjustment: 10
Effective length of query: 571
Effective length of database: 978
Effective search space: 558438
Effective search space used: 558438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_j11.g1 MSMg01no125_j11.g1 CHROMAT_FILE:
MSMg01no125_j11.g1 PHD_FILE: MSMg01no125_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:41 2005
(502 letters)
>mm_chr1_108223113_108224015
Length = 903
Score = 926 bits (479), Expect = 0.0
Identities = 497/503 (98%), Gaps = 1/503 (0%)
Strand = Plus / Minus
Query: 1 aatcaccttgacttaccttctgtgtacccttcagactgaagctcttgcccctcggtgctc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aatcaccttgacttaccttccgtgtacccttcagactgaagctcttgcccctcggtgctc 644
Query: 61 taattgggaactcaatcctacagcac-gtcaggtgtgacataaacaacctacatgcactc 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 643 taattgggaactcaatcctacagcacagtcaggtgtgacataaacaacctacatgcactc 584
Query: 120 taacaggtgaggaatagagtactttgcatggtagaggctgttgcccctgcatgcagaagg 179
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 583 taacaggtgaggagtagagtactttgcatggtagaggctcttgcccctgcatgcagaagg 524
Query: 180 agtaatagaaaatacctttacacacatagtcctcttggggctatctgtgtttgttatctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtaatagaaaatacctttacacacatagtcctcttggggctatctgtgtttgttatctg 464
Query: 240 aaaaactcatgtctcccagaccagcctcagcatctctaggaacacccatccctcagaagg 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaaaactcatggctcccagaccagcctcagcatctctaggaacacccatccctcagaagg 404
Query: 300 tatgactcattttctggctttcatttgtcctcacaaatctactcccctggaactgaactt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tatgactcattttctggctttcatttgtcctcacaaatctactcccctggaactgaactt 344
Query: 360 tcatctcttcccaatttcttggcaaatgtctgccctttacaacttctgagatggctacac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcatctcttcccaatttcttggcaaatgtctgccctttacaacttctgagatggctacac 284
Query: 420 actgatttatgcacggcctgctccaagacctgagcaatccaccagcctcagtccagaacg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 actgatttatgcacggcctgctccaagacctgagcaatccaccagcctcagtccagaacg 224
Query: 480 tatctacttctcttttgagcctc 502
|||||||||||||| ||||||||
Sbjct: 223 tatctacttctcttctgagcctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
