GCGGCCGCTAAACGACTCCTATAGTGCGACAATCCGCGGAATTCTTTGTA
GACTACGCTGGCTTTAAACTTAGAGATCCCCCTGCCTCTGCCTCATAAGT
GCTGGGATTAGAAGGATGGGTATTATCCTCTTCATTTTTCAGACAAACTG
AGATTACCAGCTAAATTACCCCAAACACGAAGCTAGTATGTGGCAGGCAT
AACTGATGTCAGGCTTGACTCCAGACCCCAGCTATAATTCTGCCCAGCTG
CTCACCGTGGACACTGCAGACGGATACTCAGGCATCCCTGTTGAGGGCTG
TGCACAGTCACACTTACCTATCCTTGACTATGCTGAAGTAAAAGCTGGAC
AGTTCTCTGGTGTAGAAGGCTTTCAACAGCCTGACAACTTTCCCAAAGTC
ATACTGTTTGTATGAATCAGTAATCTAGTGAGCAAAGACAGTGAACGTGA
AGGCTGCAGCGAGCAACGAGCACAGCAGGACATCATGGCAAAGCAAGCTC
CTCCCACCAGCAGCTCAGAGGAGTTGGCTCAGATGCCACACTTGCTGCAC
AGGCACAAGAACCAGTGTGGACCCCCAGAACTCGCATAAGTCCTGGGTAG
CATAGGCCACTGTGGAGCAGTTATCTCTGAGGCAGGCTGGCTGCACAGGC
CATCCTAGGGCTGAGCTCTGGGTTTCCTCCCCTTTAATAAAGCTTCCCCT
GGAGTCCTGA

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGATAAGAAAATCATTATCAGAACTA
GATGCGGCAACAATCCTACCTGGAAACTTTCAGAGATGATAACTTGGTAA
ATAAGAAAAGGAGAAGGAACACATCATAGCCGCAGCTTAGTTCCAGCAGG
AAGTAACCTTTAGCCACCTCACAAAGCAAAGCAACAGTCCAGAACCCACC
TTTCCCTCCACCTCAGCAAAGCGTACCCCCTCTAATGTTTTGAGAGCACT
CCCTGTCTTAAGAGGCAATCTGTCTTTCCATCTTAATAGCTATGCATTTT
GCATTCATTTATTAGGTGTTCATGTCTCACGGTCCAAGAATGGACTTAAG
AATATATACTTCTGCAATGCTATAAGTTCTATAAGTTCTATAAATAAGCT
GACGTTCACCTTTTATGGTCTTTGAGGGGAAGAGAAGGAAACATAAGGTG
CTTAACTTCTTTTCTACCCACTTAAGCTTTGAGCTCACTTGAGAGTCAGC
TAGAAGTTCTGATGGGTTTAAAAGCAAAGGCTACAGGGTTCATCTCGGTA
ACAGAGCAGTTCCTTAGCATGCACAAGCCCTGTATGCAATTCCCCAGCAC
CACAAGACAGACAAGACCGACTTCGAGTCCCATGTCATAGTCACTGAGTC
CTTCAGCACTCCTGGTATATACAT

Query= MSMg01no125_k20.b1 MSMg01no125_k20.b1 CHROMAT_FILE:
MSMg01no125_k20.b1 PHD_FILE: MSMg01no125_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:47 2005
         (541 letters)



>mm_chr1_187114743_187115683
          Length = 941

 Score =  984 bits (509), Expect = 0.0
 Identities = 533/541 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaacttagagatccccctgcctctgcctcataagtgctgggattagaaggatgggta 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaacttaaagatccccctgcctctgcctcataagtgctgggattagaaggatgggta 260

                                                                       
Query: 61  ttatcctcttcatttttcagacaaactgagattaccagctaaattaccccaaacacgaag 120
           ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 261 ttatcatcttcatttttcagacaaactgagattaccagctaagttaccccgaacacgaag 320

                                                                       
Query: 121 ctagtatgtggcaggcataactgatgtcaggcttgactccagaccccagctataattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagtatgtggcaggcataactgatgtcaggcttgactccagaccccagctataattctg 380

                                                                       
Query: 181 cccagctgctcaccgtggacactgcagacggatactcaggcatccctgttgagggctgtg 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cccagctgctcaccgtggacactgcagacggatactcagacatccctgttgagggctgtg 440

                                                                       
Query: 241 cacagtcacacttacctatccttgactatgctgaagtaaaagctggacagttctctggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagtcacacttacctatccttgactatgctgaagtaaaagctggacagttctctggtg 500

                                                                       
Query: 301 tagaaggctttcaacagcctgacaactttcccaaagtcatactgtttgtatgaatcagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tagaaggctttcaacagcctgacaactttcccaaagtcatactgtttgtatgagtcagta 560

                                                                       
Query: 361 atctagtgagcaaagacagtgaacgtgaaggctgcagcgagcaacgagcacagcaggaca 420
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 atctagagagcaaagacagtgaacgtgaaggctgcagcgagcaacaagcacagcaggaca 620

                                                                       
Query: 421 tcatggcaaagcaagctcctcccaccagcagctcagaggagttggctcagatgccacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatggcaaagcaagctcctcccaccagcagctcagaggagttggctcagatgccacact 680

                                                                       
Query: 481 tgctgcacaggcacaagaaccagtgtggacccccagaactcgcataagtcctgggtagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgcacaggcacaagaaccagtgtggacccccagaactcgcataagtcctgggtagca 740

            
Query: 541 t 541
           |
Sbjct: 741 t 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no125_k20.g1 MSMg01no125_k20.g1 CHROMAT_FILE:
MSMg01no125_k20.g1 PHD_FILE: MSMg01no125_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:48 2005
         (651 letters)



>mm_chr1_187288611_187289661
          Length = 1051

 Score = 1228 bits (635), Expect = 0.0
 Identities = 647/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggataagaaaatcattatcagaactagatgcggcaacaatcctacctggaaactttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tggataagaaaatcattatcagaactagatgcggcaacaatcctacctggaaactttcag 653

                                                                       
Query: 61  agatgataacttggtaaataagaaaaggagaaggaacacatcatagccgcagcttagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agatgataacttggtaaataagaaaaggagaaggaacacatcatagccgcagcttagttc 593

                                                                       
Query: 121 cagcaggaagtaacctttagccacctcacaaagcaaagcaacagtccagaacccaccttt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cagcaggaagtaaactttagccacctcacaaagcaaagcaacagtccagaacccaccttt 533

                                                                       
Query: 181 ccctccacctcagcaaagcgtaccccctctaatgttttgagagcactccctgtcttaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ccctccacctcagcaaagcgtaccccctctaatgttttgagagcactccctgtcttaaga 473

                                                                       
Query: 241 ggcaatctgtctttccatcttaatagctatgcattttgcattcatttattaggtgttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggcaatctgtctttccatcttaatagctatgcattttgcattcatttattaggtgttcat 413

                                                                       
Query: 301 gtctcacggtccaagaatggacttaagaatatatacttctgcaatgctataagttctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtctcacggtccaagaatggacttaagaatatatacttctgcaatgctataagttctata 353

                                                                       
Query: 361 agttctataaataagctgacgttcaccttttatggtctttgaggggaagagaaggaaaca 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agtgctataaataagctgacgttcaccttttatggtctttgaggggaagagaaggaaaca 293

                                                                       
Query: 421 taaggtgcttaacttcttttctacccacttaagctttgagctcacttgagagtcagctag 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 292 taaggtgcttaacttcttttctacccacttaagctttgagctcgcttgagagtcagctag 233

                                                                       
Query: 481 aagttctgatgggtttaaaagcaaaggctacagggttcatctcggtaacagagcagttcc 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aagttccgatgggtttaaaagcaaaggctacagggttcatctcggtaacagagcagttcc 173

                                                                       
Query: 541 ttagcatgcacaagccctgtatgcaattccccagcaccacaagacagacaagaccgactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttagcatgcacaagccctgtatgcaattccccagcaccacaagacagacaagaccgactt 113

                                                              
Query: 601 cgagtcccatgtcatagtcactgagtccttcagcactcctggtatatacat 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cgagtcccatgtcatagtcactgagtccttcagcactcctggtatatacat 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)