BAC Information

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BAC

Clone NameMSMg01-125N10
Chromosome1 (Build37)
Map Location 74,860,166 - 74,860,318
singlet/doubletsinglet
Overlap geneLOC100042901
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a
Downstream geneCdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125N10.T7 (MSMg01no125_n10.b1)MSMg01-125N10.TJ (MSMg01no125_n10.g1)
ACCAG334821AG334822
length712703
length of high quality
(start - end)
628 (47 - 674)156 (76 - 231)
definitionCHROMAT_FILE: MSMg01no125_n10.b1 PHD_FILE: MSMg01no125_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:00 2005CHROMAT_FILE: MSMg01no125_n10.g1 PHD_FILE: MSMg01no125_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAGAGCCGCGGA
ATTCTCTATTTATTCCACAGCTGGCCTCTGGAGTGCTGGGATTAAAAGTG
TATGTCACCGTGATCAGCTGTTTGTATGATGGGGAGTGAATCTATAACCT
TATGTATACTCTCTAGGCAAACATTCTACCACTGAGATATATATATATAT
ATATCCCTTGACTTTCCTACAGCACTTTTATTTGGTTATTTTCATTTTTA
TGCACGTACACGTTTATTATGTACAGAGTGTGGAGAAGCTTCCTCAGTCA
CTTTGATCTGCATTTTTTTTTTTTGAGATAGGATCTGCCACTGAACCTAG
AGTCTACCAATAAGCTGATGGACCAGGAACAAGTTGAAGGGGTCCTCCTG
TCTCTGACCTCCAAGCACTGGGACTACAGGCTTGTGTAAAAATATCTTTT
ATTCTGTAAAAATTGTCTCCAAGGCTTAGTGCCTCCATCTGCTAACCTAG
GCCTAGTACTGGAAGCTTCCAGCCTCCGTACAAATCTAAGCTAGGCCTCT
GAGACTTATTGCTGAATAAACTCACCCCTTCCTGGTTCTTTCTGATCTCT
GGCTGTCAGGTCAACTCAGCTGTGCTGGCTCAACACTCCTTTCCAAGATG
ACTGATTCAATCTGGCTCCTCTCAGCCTCCGTCTGACCTTTCACTGTTTG
GCCTCAAACTAA
TTCATTGATAGTGGGAGGCCTGGAGGCCGCCTTTTTCTCAGCGAGTAGGT
GACACTATAGAATTATCAACAGGAATTCTCTTAGTGGAAATTGCTCCCCT
AGGCCCTTAGGCTCCCACTCAGGACCCTCGGATCTTTACAAAGTGACTCA
CAGAGTCATCAGGTTTTATAATTCACTGCAGAAGCAGCAACAGGCTGTGT
CAGGGCTGGGGTAGCTGTCTGAGGAGTAGCACTAGTTGTCTGAGGGTTAG
CTGTACCTGTATCAGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCT
GTGGCAGTGGCTGTAGCTGGCTGTTTCTTTTTCTGTAGCAGTGGCTGTGG
CTGTGGCTGTGGCTGTGTCTGCGCCTGTGCCTGTATCTGGTTGTAGCTGT
AGCTGTACCTGTAGCTGTAGCTGTAGCTGTAGCTGTAGCTGCACCTGTAC
CTGTAGCTGTAGCCGTACCTGTATTTGTATATGTATCTGTAGCTGTAGCT
GTATCTGTCTCATTTCCAGTACCATTACCAGTTATACGTACCCTTCGTAG
TATTAGTACCAGACGCTGTACCTGTATCTGTATCTAACGTCGTAACTGCA
TCTGCCGCCGTCCGAATTATTATCCCTTACAGCCTGCTCACCCTCTCCTT
CTGACACTGTACTTTGTCTGACTTATCGCGCCTAATTCTCTTCCACTCCC
TAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_n10.g1 MSMg01no125_n10.g1 CHROMAT_FILE:
MSMg01no125_n10.g1 PHD_FILE: MSMg01no125_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:00 2005
         (156 letters)



>mm_chr1_74859966_74860518
          Length = 553

 Score =  279 bits (144), Expect = 8e-80
 Identities = 153/156 (98%), Gaps = 3/156 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcttagtggaaattgctcccctaggcccttaggctcccactcaggaccctcggatct 60
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct: 353 ttctcttagtggaaattgctcccct-ggccctt-ggctcccactcaggaccct-ggatct 297

                                                                       
Query: 61  ttacaaagtgactcacagagtcatcaggttttataattcactgcagaagcagcaacaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttacaaagtgactcacagagtcatcaggttttataattcactgcagaagcagcaacaggc 237

                                               
Query: 121 tgtgtcagggctggggtagctgtctgaggagtagca 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgtgtcagggctggggtagctgtctgaggagtagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 553
Length adjustment: 8
Effective length of query: 148
Effective length of database: 545
Effective search space:    80660
Effective search space used:    80660
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)