Query= MSMg01no125_n11.b1 MSMg01no125_n11.b1 CHROMAT_FILE:
MSMg01no125_n11.b1 PHD_FILE: MSMg01no125_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:00 2005
(558 letters)
>mm_chr1_137262830_137263788
Length = 959
Score = 1056 bits (546), Expect = 0.0
Identities = 552/554 (99%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 4 gaattcaagctt-cccccagactgccctttctgtagtggtacacggactctagggatgat 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattcaagcttccccccagactgccctttctgtagtggtacacggactctagggatgat 698
Query: 63 gtctactgtcaccttgaatggcttgccagggaccctgagctttgggaggccttttaggga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtctactgtcaccttgaatggcttgccagggaccctgagctttgggaggccttttaggga 638
Query: 123 acctgggaccattgggaacattaggaccattaacatgaaaaaaggtgaggtatagccact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acctgggaccattgggaacattaggaccattaacatgaaaaaaggtgaggtatagccact 578
Query: 183 tgaagctaaaggtttgtatatattatcaaaatcttatggaaaaacagatatatagctatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgaagctaaaggtttgtatatattatcaaaatcttatggaaaaacagatatatagctatt 518
Query: 243 tatacagcagcaggtgatgtgaagaaaatgtctgctttggcatcaacccttcaggtccag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tatacagcagcaggtgatgtgaagaaaatgtctgctttggcatcaacccttcaggtccag 458
Query: 303 ctgctgtctgtctgtctttctactcccatctggagcctaccctctctcaggcactgtcca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctgctgtctgtctgtctttctactcccatctggagcctaccctctctcaggcactgtcca 398
Query: 363 accatgcctgctgcccaggcatatcaggtggagggtttgtagtatcctctgccctcctac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 accatgcctgctgcccaggcatatcaggtggagggtttgtagtatcctctgccctcctac 338
Query: 423 tttgcctttggactttcatcccctccagcctctaccactgtcccatagagtgccactggc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttgcctttggactttcatcccctccagcctctaccactgtcccatagagtgccactggc 278
Query: 483 ccagcaactttgcccaagggctcctcagagacctgaatcctggtcctggggacagtgagg 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 277 ccagcaactttgcccaagggctcctcagagacctgaatcctggccctggggacagtgagg 218
Query: 543 ctggggtccaaatg 556
||||||||||||||
Sbjct: 217 ctggggtccaaatg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_n11.g1 MSMg01no125_n11.g1 CHROMAT_FILE:
MSMg01no125_n11.g1 PHD_FILE: MSMg01no125_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:00 2005
(517 letters)
>mm_chr1_137158806_137159722
Length = 917
Score = 980 bits (507), Expect = 0.0
Identities = 516/521 (99%), Gaps = 4/521 (0%)
Strand = Plus / Plus
Query: 1 caggccagaaaggactgcataatgagtttcacaaaaccacaaaaacccagggctggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caggccagaaaggactgcataatgagtttcacaaaaccacaaaaacccagggctggtgag 256
Query: 61 atggcctccgggtaagaatacttgccactaagctggtgacccaggcttgatctctggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atggcctccgggtaagaatacttgccactaagctggtgacccaggcttgatctctggaac 316
Query: 121 ccacctagtggtacaagagaagcaacttccacaagttgtcttctgacctccacgtgtgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccacctagtggtacaagagaagcaacttccacaagttgtcttctgacctccacgtgtgca 376
Query: 181 tcacaacacacacacacacacacacacacacacacacacacacacacacac----cattt 236
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 377 tcacaacacacacacacacacacacacacacacacacacacacacacacacacaccattt 436
Query: 237 cttaaacataaataacaataaatgagtcattctataactccaacttatctacttcttgct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cttaaacataaataacaataaatgagtcattctataactccaacttatctacttcttgct 496
Query: 297 taaaaacatttatttaaagtgaaaaagaatgacattttactctctgcagcctgggctagg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taaaaacatttatttaaagtgaaaaagaatgacattttactctctgcagcctgggctagg 556
Query: 357 gggagcatgggaggcctcctaggactctcaggactctctagaccagaagccgccaccagg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gggagcatgggaggcctcctaggactctcaggactctctagaccagaagccgccaccagg 616
Query: 417 gcagagacccaaacccaaagaacagaagctccggggcactggagtgagaacatgaatttg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcagagacccaaacccaaagaacagaagctccggggcactggagtgagaacatgaatttg 676
Query: 477 gcaaggagcagttcttcaggaagcctgtgaagcctttctga 517
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggaaggagcagttcttcaggaagcctgtgaagcctttctga 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
