BAC Information

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BAC

Clone NameMSMg01-126C07
Chromosome1 (Build37)
Map Location 36,516,878 - 36,517,208
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l
Downstream geneCnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126C07.T7 (MSMg01no126_c07.b1)MSMg01-126C07.TJ (MSMg01no126_c07.g1)
ACCAG335042AG335043
length7251,249
length of high quality
(start - end)
339 (49 - 387)---
definitionCHROMAT_FILE: MSMg01no126_c07.b1 PHD_FILE: MSMg01no126_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:24 2005CHROMAT_FILE: MSMg01no126_c07.g1 PHD_FILE: MSMg01no126_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATGTGCTGCCAATTCAATCCTCAAAGTCTTGTGTCGGTGCCG
CCTGGGAGTGGAGACTTGGAGAACGAATTTGGATTAGGTAAAGTCACTAG
AAGGAGGGCATCATGGCTTGGCAAGAAGAAGAGAGGACCTGGCTGTCTAC
CACATTGTGATGCAGCACACAGTTTCCACAGTCTCTTGGCTTTCGCAGAC
ACCATAACCATGAGTCCAGTGAACCTGTCTTCCTTGTAAATTAACCGGTC
TCAAGGGTTTTGCTATAGGAACAAGTGAGCCAAGGTTTTAGTCAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCCCCT
TTTCTTTTTTCTTTTTTCCCCCCCCTTTCCCCCCTCTTTTTTCTATTCCC
TTTTTTCTCCTACTAGTTCCTTTCCCCGCTTTTTTCTTTTTCCCTTTTTC
TCATTTTTTCCCTATTCTCCTATCTCCTTTTCCCCTCTTTCTTTCCCCCC
CTCTTCTATTTTCTCCCTTTCCCACCAATTTCTCATCCTTTTCCCCTCCC
CCTTTATCTTTTATTTCACTTCCTTCCTCCCCCCCTTATCTTTTCCCTCT
TTTATTCCCTTTTCCTTCGATTTCCTTCCTTTTTTCCCCCTCCTTCCCCT
TCTCCTCCCCTTCCCCTTTGTTTCT
TTTACGAAAATGACAANGTGGGTGTGTACGGCCCNTAGTNGCGCGCTACG
TCCATGGTTCCCAGACAGCACAAGCGCANNGTGCGGACTTCNTANTACGT
AATGTGATCCCCTGACGNCGCGATATNCTNTATACTNTTCGNGCGAGCGT
GTCTGCGCGTGGATGTTCAGCAGCATGACGCCGATGNGCGCACTCACGCG
TTGTAGCAACACTGATGGGAACTATTATAGCAGACGAGGATCGGATAAGT
GTGCAAGCCGGCGTGNCTGTGAGCGTGTGTAGCTGCATGTGCGTGCGCGT
TGTGAGATTGATGTCGTGACACTGTGAACCGCTGTAGCGACCCGACGGTC
GATGTANGAGTGCAAGCGACAGTGATCGTAGCCGTGCGCGCGTCGTGCGT
GCGGTCTGTGCTCCCTCCTCTGTACTAGTACTGTAATACCTATTCTANTA
TAGTATTACATGAAAGAGACATCATTATATATTATGCGATATAATATACG
AACGCACACTATTACGCACACAGACAAAGTAGAATCACTACATCTNATAT
CTCTATCTTTTCATACCATTTACACCATAACAATATTACTCACGCATAAT
TACCGGGCGCCGATGCTACTGGTAAAGCCATCCGCGCGACCCATGACGGT
GATCGTTGGACGTNTGCGTGTTACGAGGNCGAGCTAGAAGCGGTGCGATG
GACGAGGGGTGTGCGTAGGACACCCCCCACCATGCGATATAAGATAATAT
GCGAGTCTATGATACGGGAAAATAATACGAGTAGGAATGACAGCGCGACA
TATGACGATCATGTATGACTAGTTAGCTCGCGAGCATTTATTTATATGCA
AGAATACAAACGAGTAAGATGCAGCTAATGCTTGTGATTATTCATGATAT
CACTATCATTCGCGACGAGACTGGTAGATCGAGCACAGCCATTTTATCAC
ACTCCATTAATCGCGCTCTCCAGAGTAGTCGCACGNCGATTTCATATATC
AAGTTGTACGACACACGCCGAAATTACAGCTCCAAAGATATAACGTAACG
CACATATATACCAGTCAGTCGACGATATATAACCTAATATGCNACCATTA
TAATATACACTGCGCGACGACAACAGCCAATTTGACGTATCTTTACGCGT
ATTACCGCGAGACGTATGATCGGAATAGCTGATACTCTATGCGTGATTCA
GCACGCGCATGATGTTNGTTGTTATATTATGCTCTATATGTCGGCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_c07.b1 MSMg01no126_c07.b1 CHROMAT_FILE:
MSMg01no126_c07.b1 PHD_FILE: MSMg01no126_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:24 2005
         (339 letters)



>mm_chr1_36516713_36517451
          Length = 739

 Score =  601 bits (311), Expect = e-176
 Identities = 326/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtgctgccaattcaatcctcaaagtcttgtgtcggtgccgcctgggagtgga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaattcatgtgctggcaattcaatcctcaaagtcttgtgtcggtgccgcctgggagtgga 437

                                                                       
Query: 65  gacttggagaacgaatttggattaggtaaagtcactagaaggagggcatcatggcttggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gacttggagaacgaatttggattaggtaaagtcactagaaggagggcatcatggcttggc 377

                                                                       
Query: 125 aagaagaagagaggacctggctgtctaccacattgtgatgcagcacacagtttccacagt 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 376 aagaagaagagaggacctggctgtctaccacgttgtgatgcagcacacagtttccacagt 317

                                                                       
Query: 185 ctcttggctttcgcagacaccataaccatgagtccagtgaacctgtcttccttgtaaatt 244
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctcttggcttttgcagacaccagaaccatgagtccagtgaacctgtcttccttgtaaatt 257

                                                                       
Query: 245 aaccggtctcaagggttttgctataggaacaagtgagccaaggttttagtcagtgtgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaccggtctcaagggttttgctataggaacaagtgagccaaggttttagtcagtgtgtgt 197

                                          
Query: 305 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 335
           || ||||||||||||||||||||||||||||
Sbjct: 196 gtatgtgtgtgtgtgtgtgtgtgtgtgtgtg 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)