XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCACAGTGGCCGCTTCTAATAGTTACTCCTCTTTCCCTGAGAGCTGCCTC
TTTAGTCAAAGTCCTCGAGAGGAGGGTAAATTGACTTAATTTTTTGCTCT
TCATTTTTTATATTATCCTTTATATCTTTATATTATCCTTTGTATCTTTA
CATTTTATATTATCCTTTGTATCTTTATATTTTAGCTTCCTTTCTTTTTT
TCTTTTTATATTTCTTAAGTTACTTATTTTTCTGCGCGCGTCTTCTTTTT
CCTTTCTCTCTGTTTCTGATATGCCTTCCTGGTACTCCTACAAAGTCGCT
GCCCTTCCTTAACAGCTGGTCCCACACAAACCCAGCAACAATTACCAGAC
CCACTGCGCACCACAGCATACCTCTCAGAGACTTACCTTAATTTCTTTAT
ACTTACTGGCACCACCGTTCCTCAGCTGAAGAGTTCTGAATCTACGCAGT
TGAATCCTTCTCAGCAGTCTGTTTTGCAGGAACCTTTATTAACACCGTTC
CTCAGCTGATGAGTTCTGAATCCACGCCGGATCCTTCTCAGCAGTCTGTT
TTACGGCAACCTTTATTAACCGCTCCTTCCCCGCGATGTAGTTCTGAATC
CTCCCTGTTATAGGGGGTCTTCGCCCGTGCCTGACCATGTTTCTTGCCCC
GGCCTTT

NCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGGCCTTGAACCCCCTAATTGGGA
GGTTGTAGCTATGAGAAACCCTTTCTGGCTACCACAGAACATGGAGTACT
AATACCATTTTCTCTGTGTGCCAAGACATGAAAAACTATTGAGAAACAAG
AGAAAGGGAAATGGCAATAGAAAACTGGTTATTTATCAATTTATTCTATA
TGTATGTGTGACTGAGTGTATGTAAGTGTACCTGTACATGTAAGAACCAA
GAGATGTCAGTCAGAAGAGGATATAGAATCACCTGGAACTGGAGTGCAGG
CTGGGAATAGAACCTGTGCCCTCTGCAAGAGGGGTAAATGTTCTTAACCA
CTGATCCATATCCCCAGCCCCTCAATAAGACTTTAGTTCACTTTAAGAAT
AGTTTTTTAGAATGCACTGACCAGTGATTGGGGGGTGGGTAACAAAGCAC
ATTAGCACATTTTAAGATTTTTTTGTCTGTATTTTTATATAATAATTCTT
TTGTGTCCACTAGAAACGGTGGTGCACGCTTGTAGTCCCAGCTACTTAGG
AAGCAGGTTAAGGAGGATCACGCGTTCAAGGCTGATCCTGACAACTTGGT
GAGATCTTGTATGAAGTTTTTTTTTTTTTTTTTTAATTAACAGGGCCTCC
ACATGGA

Query= MSMg01no126_c18.g1 MSMg01no126_c18.g1 CHROMAT_FILE:
MSMg01no126_c18.g1 PHD_FILE: MSMg01no126_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:27 2005
         (519 letters)



>mm_chr1_20552500_20553420
          Length = 921

 Score =  957 bits (495), Expect = 0.0
 Identities = 514/521 (98%), Gaps = 2/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggccttgaaccccctaattgggaggttgtagctatgagaaaccctttctggctacca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 acaggccttgaaccccctaattgggaggttgtagctatgagaaaccctttctggctgcca 260

                                                                       
Query: 61  cagaacatggagtactaataccattttctctgtgtgccaagacatgaaaaactattgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaacatggagtactaataccattttctctgtgtgccaagacatgaaaaactattgaga 320

                                                                       
Query: 121 aacaagagaaagggaaatggcaatagaaaactggttatttatcaatttattctatatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aacaagagaaagggaaatggcaatagaaaactggttatttatcaatttattttatatgta 380

                                                                       
Query: 181 tgtgtgactgagtgtatgtaagtgtacctgtacatgtaagaaccaagagatgtcagtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtgactgagtgtatgtaagtgtacctgtacatgtaagaaccaagagatgtcagtcag 440

                                                                       
Query: 241 aagaggatatagaatcacctggaactggagtgcaggctgggaatagaacctgtgccctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaggatatagaatcacctggaactggagtgcaggctgggaatagaacctgtgccctct 500

                                                                       
Query: 301 gcaagaggggtaaatgttcttaaccactgatccatatccccagcccctcaataagacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagaggggtaaatgttcttaaccactgatccatatccccagcccctcaataagacttt 560

                                                                       
Query: 361 agttcactttaagaatagttttttagaatgcactgaccagtgattggggggtggg--taa 418
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |||
Sbjct: 561 agttcactttaagaatagttttttagaatgcactggccagtgattggggggggggggtaa 620

                                                                       
Query: 419 caaagcacattagcacattttaagatttttttgtctgtatttttatataataattctttt 478
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 caaagcacattagcacattttaagatttttttgtctgtattcttatataataattctttt 680

                                                    
Query: 479 gtgtccactagaaacggtggtgcacgcttgtagtcccagct 519
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtccactagaaacggtggtgcacgcttgtagtcccagct 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space:   463699
Effective search space used:   463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)