BAC Information

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BAC

Clone NameMSMg01-126G11
Chromosome1 (Build37)
Map Location 103,457,803 - 103,458,277
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G11.T7 (MSMg01no126_g11.b1)MSMg01-126G11.TJ (MSMg01no126_g11.g1)
ACCAG335226AG335227
length707708
length of high quality
(start - end)
481 (44 - 524)435 (71 - 505)
definitionCHROMAT_FILE: MSMg01no126_g11.b1 PHD_FILE: MSMg01no126_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:46 2005CHROMAT_FILE: MSMg01no126_g11.g1 PHD_FILE: MSMg01no126_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTAAAAGTTGCTGGTAATTTATTATGCTGCCTAGATTATCATTATAA
AGACCAAATATCATATAGTTGGAAGGAAAAAAAAATAGAAACTCAGCCTA
AACTCACTGGCAGTTGATCTTGACAAAATGAAAATAGATTTATAGCCGCT
AGTGCCTGGAGAGAGATTGTCATCCATTTTTCTTATTCCTGCTGAGTCAT
GAGAGCCCAGCTTTAAGAATTACAGCTAAAGAGAGGAGGCATTGGTCAGT
CACATCAGTCCTGGAACTTTGCTGACTTACCTGTACCTAGTGTGGACAGA
AAATACCATCCTTATGCCCATGAGCAAGAAAATTGTCTTTCAGAGTAGAC
CTTGAATTTTAAGTATAGCATAAAGTTATTGGCCTATGTGAACTTTTGAG
CACACAGTTCACAAAAGAAAGCATTATTTTGAATCATTATCAACTTCTAA
GTATCCATTATGCATTTTTTCTTACTTTTGGCTGCATTTTTGCATTGATG
GTGCCATTATATTAATGGGACAGATTACATAATGGAGCTGCCCCTGAAGC
TACTTTATATAATATCACAGTGACCATGGAAAACACACTGCTTTGGCAGT
CCCTTCCTAGTCCCAATATTGCAAAAAGTACTAATCTTGACTCATTCCCA
TCGTTAA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCATAAAATCAAATAAT
CCCATTAAAAATTGGGGCTCAGAACTGAACAAAGATTTTTCACTTGAGGA
ATACCGAATGGCAGAGAAGCACCTGAAAAAACGTTCAACATCTTTTGTCA
TCAGGGAAATGCAAATCAAAGCAACCCTGAGATTCCACCTCACACCAGTC
AGAATGGCTAAGATGAAAAATTCAGGTGACAGAAGATGCTGGCTAGGATG
TGGAGAAAGGAATATTCCTCCATTGTTGGTGGCATTGCAAGCTGGTACAA
CCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACT
ACCAGAAGATCCACCAATACCTCTTCTGGGCATATATCCAGTACATGCCC
CAACCGATAAGAAGGACACATGCTCCACTATATTCATAGCATCCTTATTT
ATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATG
GATACAGAACATGTGGTACATTTACACAATGCAGTACTATTGAGCTATTA
AAAAGAATGAATTTTATGAAACTCTTAGGCAAATGCATGGACCTTGATGG
TCTCTTCTTGAGCGATGTAACGCAATCACTAAGACACTCTCTTAATATGC
ACTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g11.b1 MSMg01no126_g11.b1 CHROMAT_FILE:
MSMg01no126_g11.b1 PHD_FILE: MSMg01no126_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:46 2005
         (481 letters)



>mm_chr1_103457598_103458477
          Length = 880

 Score =  874 bits (452), Expect = 0.0
 Identities = 470/476 (98%), Gaps = 1/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctaaaagttgctggtaatttattatgctgcctagattatcattataaagaccaaa 65
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 206 gaattctaaaaattgttggtaatttattatgctgcctagattatcattatatagaccaaa 265

                                                                       
Query: 66  tatcatatagttggaaggaaaaaaaaatagaaactcagcctaaactcactggcagttgat 125
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 tatcatatagttggaaggaaaaaaaa-tagaaactcagcctaaactcactggcagttgat 324

                                                                       
Query: 126 cttgacaaaatgaaaatagatttatagccgctagtgcctggagagagattgtcatccatt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgacaaaatgaaaatagatttatagccgctagtgcctggagagagattgtcatccatt 384

                                                                       
Query: 186 tttcttattcctgctgagtcatgagagcccagctttaagaattacagctaaagagaggag 245
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 tttcttattcctgctgagtcatgagagcccagctttaagaattgcagctaaagagaggag 444

                                                                       
Query: 246 gcattggtcagtcacatcagtcctggaactttgctgacttacctgtacctagtgtggaca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcattggtcagtcacatcagtcctggaactttgctgacttacctgtacctagtgtggaca 504

                                                                       
Query: 306 gaaaataccatccttatgcccatgagcaagaaaattgtctttcagagtagaccttgaatt 365
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 gaaaataccatccttatgcccatgagcaagaaaattgtctttcatagtagaccttgaatt 564

                                                                       
Query: 366 ttaagtatagcataaagttattggcctatgtgaacttttgagcacacagttcacaaaaga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaagtatagcataaagttattggcctatgtgaacttttgagcacacagttcacaaaaga 624

                                                                   
Query: 426 aagcattattttgaatcattatcaacttctaagtatccattatgcattttttctta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcattattttgaatcattatcaacttctaagtatccattatgcattttttctta 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space:   409770
Effective search space used:   409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)