BAC Information

Click to search

BAC

Clone NameMSMg01-126H21
Chromosome1 (Build37)
Map Location 87,981,488 - 87,981,978
singlet/doubletsinglet
Overlap genePsmd1
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik
Downstream geneHtr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126H21.T7 (MSMg01no126_h21.b1)MSMg01-126H21.TJ (MSMg01no126_h21.g1)
ACCAG335292AG335293
length699728
length of high quality
(start - end)
569 (45 - 613)40 (73 - 112)
definitionCHROMAT_FILE: MSMg01no126_h21.b1 PHD_FILE: MSMg01no126_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:54 2005CHROMAT_FILE: MSMg01no126_h21.g1 PHD_FILE: MSMg01no126_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAA
TTCAGCTCCAAGGGCCCTGACACCTCTTCTGGCCTCCAAATGCAACCATA
CACACCCCATCCCCAGACATACAGGAATACAGACATTTTAAAAAATTGCA
CCAAGGTAGAATTCTCCAAGCATATTTACCTAAGAAACTGGTCACTGGTA
GTACCACAGTGCATGAATGAGTTTGCTATTACAGTTGCTGTATGACACAC
AGAATTTCGTACTGCATCCTACAAAAACAAACGCAGAGACTTCTTTATCA
CTGGCCAAGTATTTATACATACATTGCTCACATACATTCAGAAGCTCTAT
TCTGCAGCAAAATCAGAAAACAATTGAAATGAGATTTAACATATGAATCT
TGGGACATCTCTTTATGCAAAGATAAAATAGCTAGTCTGTAAAAATAAGA
CAAAGAGTTTTATTTGCAGTATTAACTTAAGATCACGGTCAGACTTATGT
TTGTTTTATGGCACAGGTTTCATGTCACCCAATCAGGCCTGAACTTGATT
GAGCTCCTGACACTCTGACGTCAGCTCCAGCCTGTGGAGTCTAGGAGTAT
CACAACCCAGCTTAATTACAGATCTGATCAGATTTCCTACTCCTCTCTTT
CTAAAGAGTCTAACTATTCAGTTAACTACTCAGACATTTCTATTTCTCC
CATACTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCATTCCCTGGCTGTTTATCATTGCTTA
CACCTTCCTACAAAGTATGTCACCACAAAAGATTTGGATATTTTCGCCTC
GCGCGAGTGGTCTCCCCCCCCTTCCTCTCCTCTCTCTTTTACTCTCCTCC
TTCTCTCTTTTTCTTCTCCTCCTTCCCTTTTCCTCTCTCTTTTTTTTTCC
CCTTTTCCTCTCCCTTTTTCCTCTCTTCTCCCTCCTTCCCTCTCCTCCCC
TTTTCTCCCTTTTCCCCCCCCCCTTCCCTTTTTTTTTTCTTCCTCCCCCC
TTCTTCATTTCTTTCTTTTCTCTTTTCTCCCCCCCCCCCCTCCCCCCTTC
TCCCTTCTTCTCTTTCTTCCTCCCTCCCCCCCCCTTTCTCCCTTTTTTCC
CCCCTCTCCTCCCCTCCCTCCTCCTTTCCCTCCTCTTCTCCTCCTTTTCT
CCTCCTCCCCCCCCTCCCCTTTCTCTTATTCCCCTCTCTCCCTCCTCCCC
TTCCCCCCTCCTTCCCCCCCTCCCCCTTCCTCCTCCCTCTCCCTCTTTCC
TCCCCCTCCTCCTCTTCCCTCTTTTCCTTCCTCCCCCTCCCTCCCCTCCC
TTCTCTTTCTTCCCCTCCCCCCTTTTCCTCCATTTCCCCCCTTTCCCCCT
CCTCCCCTTTCCCCTCTTCCCCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_h21.b1 MSMg01no126_h21.b1 CHROMAT_FILE:
MSMg01no126_h21.b1 PHD_FILE: MSMg01no126_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:54 2005
         (569 letters)



>mm_chr1_87981488_87982456
          Length = 969

 Score =  880 bits (455), Expect = 0.0
 Identities = 485/501 (96%), Gaps = 10/501 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcagctccaagggccctgacacctcttctggcctccaaatgcaaccatacacacc 62
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggaattcagctccaagggatctgacacctcttctggcctccaaatgcaaccatacacacc 432

                                                                       
Query: 63  ccatccccagacatacaggaatacagacattttaaaaaattgcaccaaggtagaattctc 122
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccatccccagacatacaggaatatagacattttaaaaaattgcaccaaggtagaattctc 372

                                                                       
Query: 123 caagcatatttacctaagaaactggtcactggtagtaccacagtgcatgaatgagtttgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caagcatatttacctaagaaactggtcactggtagtaccacagtgcatgaatgagtttgc 312

                                                                       
Query: 183 tattacagttgctgtatgacacacagaatttcgtactgcatcctacaaaaacaaacgcag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tattacagttgctgtatgacacacagaatttcgtactgcatcctacaaaaacaaacgcag 252

                                                                       
Query: 243 agacttctttatcactggccaagtatttatacatacattgctcacatacattcagaagct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||          ||
Sbjct: 251 agacttctttatcactggccaagtatttatacatacattgctcacata----------ct 202

                                                                       
Query: 303 ctattctgcagcaaaatcagaaaacaattgaaatgagatttaacatatgaatcttgggac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattctgcagcaaaatcagaaaacaattgaaatgagatttaacatatgaatcttgggac 142

                                                                       
Query: 363 atctctttatgcaaagataaaatagctagtctgtaaaaataagacaaagagttttatttg 422
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 atctctttatgtaaagataaaatagctagtctgtaaaaataagacaaagagttttatttg 82

                                                                       
Query: 423 cagtattaacttaagatcacggtcagacttatgtttgttttatggcacaggtttcatgtc 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 81  cagtattaacttaagatcacggtcagacttatgtttgttttatggcacaggtttgatgtc 22

                                
Query: 483 acccaatcaggcctgaacttg 503
           |||||| ||||||||||||||
Sbjct: 21  acccaaacaggcctgaacttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)