BAC Information

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BAC

Clone NameMSMg01-126I08
Chromosome1 (Build37)
Map Location 142,737,610 - 142,737,853
singlet/doubletsinglet
Overlap genenone
Upstream geneBC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126I08.T7 (MSMg01no126_i08.b1)MSMg01-126I08.TJ (MSMg01no126_i08.g1)
ACCAG335312AG335313
length704708
length of high quality
(start - end)
313 (45 - 357)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no126_i08.b1 PHD_FILE: MSMg01no126_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:56 2005CHROMAT_FILE: MSMg01no126_i08.g1 PHD_FILE: MSMg01no126_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGG
AATTCACTGGTCTTCCCACATTCCCCATCATCCTGAAGCAGCTGGTCTGA
TAGAAAGATGGAATGGCCTTTTGAAGACGCAGTTACAGCGCCAATTAGGT
GGTAACAGCTTGGAAGGCTGGGGTAGAGTTCTTCAGAAGGCAGTATATGC
TTTGAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGGATTC
ATGGGTCCAGGAATCAAGGGGTGGAAAACAGAATAGTTCCACTTACTATC
ACTCCTAGTGACCCTCTAGGAAATTTTTTGCTTCCTGTCCCCATAACTCT
AGGCTCTGCTGGCCTATAAGCTTTGGCTCCAGACAGGGGAGTGCTTCTAC
CTTTATCTACAACATACACCCCATTGATCTGGAAGCTCAGACTCCCCATC
TGGTTCTTTTGGTTTTCTAATGTTTCCTACCCCACAGGTCAATTAAGGAA
CATCCGTGTTATGAGGACGCGACATACCCAGATCATTTTGCGTTATATTG
CATTACCCCCCTACATCGCTGCTAATCACGATTATGCCTTCCGTGTTCGC
ACACCCTTACCATGTCTTCTCCTACCTCCCCAGCCCCTTCGATTTTTTGC
TTTGTTGACACTCCTATCCGCCTATTCTACGCCTTTCGTTTTCACTCTCC
ACAC
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATGAGTAGGCTCGAAACTGATAGCA
ATGCTCTGAAATCACATTGGCGCATCAGCAGCTAATTGCTCAGAGGTTCT
GACTTATATGTAGGAATGAAGGCAATCTAAATAACTTAATGCAAAAGAAA
AAGGGATTATGGCAAGATGAGCATAAAGAGATAAATGGTCTTAATTGTGT
CCTGTCTGGATACCTTGCAAATTCCACCAATAAGTGTTCTGAGGGCCTTT
TGATGTGGGCACAAATTTCCTTTTTTAATGTGACTTATATCAGGAATTCA
TAAGTATCATGCAAGATACCTCAATGCAAGCAGAGGTCACCTGAACTATT
CCGTCATAATTTATACCTGAACAACTTTCCTAGAAGTTCCAAATAAAAGA
GAGAAAGGCAAATATTCATGCATTTGTCATCCACATGGCCTGTAATAATC
AAATATTTGAAAGTATGCTGTCATTTATCATCCTTTTACTCATTATCTGA
CCAAGACAAGACCTTTCCTCCTTCCTCCTTGCAGTTTGTTTTTAAGCTAC
TCCACTAATTCTTATCTCATGAGTATTATTTTTGGTAACACACTTTTGAT
CAATAATTTTTAAAGCCTAAACCCATCTGCATTTTGCAATCCATGATTTT
TATTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_i08.g1 MSMg01no126_i08.g1 CHROMAT_FILE:
MSMg01no126_i08.g1 PHD_FILE: MSMg01no126_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:56 2005
         (244 letters)



>mm_chr1_142737410_142738053
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgagtaggctcgaaactgatagcaatgctctgaaatcacattggcgcatcagcagcta 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 444 catgagtaggctcgaaactgatagcaatgctctgaaatcacattggtgtatcagcagcta 385

                                                                       
Query: 61  attgctcagaggttctgacttatatgtaggaatgaaggcaatctaaataacttaatgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgctcagaggttctgacttatatgtaggaatgaaggcaatctaaataacttaatgcaa 325

                                                                       
Query: 121 aagaaaaagggattatggcaagatgagcataaagagataaatggtcttaattgtgtcctg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagaaaaaggtattatggcaagatgagcataaagagataaatggtcttaattgtgtcctg 265

                                                                       
Query: 181 tctggataccttgcaaattccaccaataagtgttctgagggccttttgatgtgggcacaa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 tctggataccttgaaaattccaccaataagtgttctgagggccttttgatgtgggaacaa 205

               
Query: 241 attt 244
           ||||
Sbjct: 204 attt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)