Query= MSMg01no126_j11.b1 MSMg01no126_j11.b1 CHROMAT_FILE:
MSMg01no126_j11.b1 PHD_FILE: MSMg01no126_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:02 2005
(494 letters)
>mm_chr1_153348175_153349069
Length = 895
Score = 905 bits (468), Expect = 0.0
Identities = 486/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 4 ggaattccataataacgctactggaagctataagccacctcgcccaatttcagtgcagtg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggaattccataataacgttactggaagctataagccacctcgcccaatttcagtgcagtg 636
Query: 64 caaattaagtgccttcccatttatcatctgctattcttgattatcctttcaagagaccat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 caaattaagtgccttcccatttatcatctgctattcttgattatcctttcaagagaccat 576
Query: 124 gaccaatgaaacattttgaagttagggaactttttttcctacgtgttacttaaaagttaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaccaatgaaacattttgaagttagggaactttttttcctacgtgttacttaaaagttaa 516
Query: 184 atgcaggaattaccgagtgacaacttgcaggctgtttttttgggtagtggtggtggtaat 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 515 atgcaggaattaccgagtgacaacttgcaggctatttttttgggtagtggtggtggtaat 456
Query: 244 gataactatctatggctacttatattttcaaattcagaacactgaaagcgtcaaggaggt 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gacaactatctatggctacttatattttcaaattcagaacactgaaagcgtcaaggaggt 396
Query: 304 cgatat-aagagtagcaaggagatcattagggacgtactaacaagcgcctatttccagag 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cgatataaagagtagcaaggagatcattagggacgtactaacaagcgcctatttccagag 336
Query: 363 ttgaaggccactttccttagatcttgctggctttgtatgccttagagatccaaagtccgg 422
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttgaaggtcactttccttagatcttgctggctttgtatgccttagagatccaaagtccgg 276
Query: 423 aaagttctgcagcagaaaccctgaggatttacttgggctgtgatgactacgaggacgagg 482
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 275 aaagttctgcagcagaaaccctgaggatttacttgggctgggatgactacgaggacgagg 216
Query: 483 acgaagtcaggg 494
||||||||||||
Sbjct: 215 acgaagtcaggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space: 428340
Effective search space used: 428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_j11.g1 MSMg01no126_j11.g1 CHROMAT_FILE:
MSMg01no126_j11.g1 PHD_FILE: MSMg01no126_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:02 2005
(571 letters)
>mm_chr1_153278054_153279024
Length = 971
Score = 1089 bits (563), Expect = 0.0
Identities = 569/571 (99%)
Strand = Plus / Plus
Query: 1 tttttggaccatcactatccgaactaaaaactaagttacttttttgggcctgtattttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttggaccatcactatccgaactaaaaactaagttacttttttgggcctgtattttat 260
Query: 61 tctaagtttttgaacaaagcctagtatatgaagtttatcaagctcatatctgtaatttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tctaagtttttgaacaaagcctagtatatgaagtttatcaagctcatatctgtaattccc 320
Query: 121 gaatttgagaagctgaagtaggaggataatgagtttgaagccagcataggctacatagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatttgagaagctgaagtaggaggataatgagtttgaagccagcataggctacatagtt 380
Query: 181 ccagaagagtcgtagctatatagtgagctcctatctcaagaaagaaaagtataaagacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaagagtcgtagctatatagtgagctcctatctcaagaaagaaaagtataaagacag 440
Query: 241 taatacaatgatgtttgtcactccttgcttttgcttagaaaactgtcatttgagcagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatacaatgatgtttgtcactccttgcttttgcttagaaaactgtcatttgagcagaat 500
Query: 301 cgtccgatggtgttagatcccagaatcagtgataaaaatgtgctactacattcaaaacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtccgatggtgttagatcccagaatcagtgataaaaatgtgctactacattcaaaacag 560
Query: 361 ctaatggtttttaaaaactttaactatcctcagtgtctgctgagtagcagttcctgaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaatggtttttaaaaactttaactatcctcagtgtctgctgagtagcagttcctgaact 620
Query: 421 tgaccgttagtcatcagaaagatgaatcaagtacaactgctgcccttttattgtttactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaccgttagtcatcagaaagatgaatcaagtacaactgctgcccttttattgtttactg 680
Query: 481 taagaaaggcaaaaaagagccgggcatggtggcgcacgcctttgaccccagcactcggga 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 taagaaaggcaaaaaagagccgggcatggtggcgcatgcctttgaccccagcactcggga 740
Query: 541 ggcagaagcaggcggatttctgagtttgagg 571
|||||||||||||||||||||||||||||||
Sbjct: 741 ggcagaagcaggcggatttctgagtttgagg 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
