BAC Information

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BAC

Clone NameMSMg01-126M10
Chromosome1 (Build37)
Map Location 76,373,516 - 76,373,838
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps, Epha4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126M10.T7 (MSMg01no126_m10.b1)MSMg01-126M10.TJ (MSMg01no126_m10.g1)
ACCAG335500AG335501
length691708
length of high quality
(start - end)
329 (43 - 371)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no126_m10.b1 PHD_FILE: MSMg01no126_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:17 2005CHROMAT_FILE: MSMg01no126_m10.g1 PHD_FILE: MSMg01no126_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGACCGCGGAAT
TCAATGCTGACCCCCAATTAGAAGACCTCTGTTCAGGTTGGAGGCAGGAT
CAGGAACAAGAAATAGACTGTATCTGCCCTGTTGGGGGTGGGGCACAACC
TGCTGGGAGCATAAAGGAGAGTAGCCCAAACTCACTGCTACACTGCCCTT
TTCAGTAATAACACCCTGAAATATCTCATAGAATTCCTCACCCACTGAAC
GCCTTAAAGGTGAACTATTCTCTTTGAACTATTTTTTTTATAGACAAACA
CATAGCAGCCTCCAGTGTATACATCCTATTGCTGATAAGCAAACAATCAT
TGATAATATTGAATTTGCACGAAAATCATCGTGAAGCATATACCAAGAGC
TGCTATGCCCTGCCCAACAAGCTGGCTTTGTATCAACTTAACCCCTGCTC
CAGTCATCAGAGAGGAATGATCCTCAGCTGATACAATGCTCCCATGGGAT
GTACCTGCAGCTCATTTTCTCATTCACTGATCACTGTTTAAAGGTCCAGT
CCATTATGAGTGGTGGAATCCCTGGGCTGGTAGTCCTTGGTTCTAAAGAT
CGTAGGCTGACCCAGCCAGCGCATGCATGCCCATCATAAGTACCTCTTCA
TGTCTTCTGCATTCACCCCTGCTTCCATGTCCCGTCCCCGG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAGGCAAATGGATGGACCTGGAGGG
TATCATCTTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGT
ACTCACTGGTAAGTGAATATTTGCCCAGAACCTTAGAATACCCAAGATAT
CAGGTACAATTTGCTAAACACAGGAAACTCAAGAAGAACGAAGACCAAAG
TGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAG
GAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAG
AGATTGCCATACCCGTGGATCCATCCCATAATCAGCCTCCAAACGCTGAC
ACCATTGCATACACTAGCAACACTTTGCTGAAAGGACCCTGATATAGCTG
TCTCTTGTCAGACTATGCTGGGACCTAGCAAACACAGAAATGGATGCTCA
CAGTCAGCTATTGGATGGATCATAGGCCCCCAATGCAGGAGCTAGAGAAA
GTACCCAAGGAGCTAATGGGATCTGCAACCCTATAGGTGGAACAACATTA
ATGAATTAACCAGTACCCCCGGAGCTCTTGATTCTAGCTGCATATGTATC
CCTAAGATGGTCCAATTTGGCCATTTCGCGGTACAAAGAGGTCCATTGGC
CCCTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_m10.b1 MSMg01no126_m10.b1 CHROMAT_FILE:
MSMg01no126_m10.b1 PHD_FILE: MSMg01no126_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:17 2005
         (329 letters)



>mm_chr1_76373312_76374040
          Length = 729

 Score =  569 bits (294), Expect = e-166
 Identities = 317/328 (96%), Gaps = 10/328 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgctg---acccccaattagaagacctctgttcaggttggaggcaggatcag 61
           |||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaattcaatgctgaaaa--cccaattagaagacctctgttcaggttggaggcaggatcag 470

                                                                       
Query: 62  gaacaagaaatagactgtatctgccctgttgggggtggggcacaacctgctgggagcata 121
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaacaagaaat--actgtatctgccctgttgggggtggggcacaacctgctgggagcata 412

                                                                       
Query: 122 aaggagagtagcccaaactcactgctacactgcccttttcagtaataacaccctgaaata 181
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaggagagtagcccaaactcactgctacactgcccttttcagtaataacaccctgaaata 352

                                                                       
Query: 182 tctcatagaattcctcacccactgaacgccttaaaggtgaactattctctttgaactatt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tctcatagaattcctcacccactgaacgccttaaaggtgaactattctctttgaactatt 292

                                                                       
Query: 242 tt--ttttatagacaaacacatagcagcctccagtgtatacatcctattgctgataagca 299
           ||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 291 ttctttttatagacaaacacatagcagcctccagtgta-acatcctattgctgataagca 233

                                       
Query: 300 aacaatcattgataatattgaatttgca 327
           ||||||||||||||||||||||||||||
Sbjct: 232 aacaatcattgataatattgaatttgca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)