NCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGCAATTAACCTAATCATGTTGCCTTTTAGAACCAACTCTT
AGATAATTCATCATCAAAGTGGTTAATATGAGCAAAACTGCTTTGTGAAT
TATGCACTTAAAATGTTATTATCTATATAACTCTTATAATAGCTTAATAT
CTCAGTCATTTGATGTTAAGCTATACCACAATTATTAATTCAGGTTTGAC
TATTTTTAAGTGAACATGATTTTTGAAATCTGAATATATAAAATGCTTAA
ATTGTAAGCTGACTATTTCCTATTGCAAAAAGAATGTTTATTAAATTCAG
CTCCTGGGATGATTTGGAAATATGGGGATATTGACATATGACTTTAAATT
TAAAACATTGAAAATTATATTTAGCATATAATACTATATTATATGGTACA
TGCTTTTGTTAAAACACCTCAAATAACAACATAACTCTTGTCATCTAATA
AGCCATATTTAACTTTCTCAGTCAAGACTCAGAAAAGAAAGTCTATGTGA
AGATCTGTTTCTATTTACAGAAGGGACTGATGTTGAATAGCTTAGTGTTC
TTAAACCTACCTGGCGAGTTAATGGTCTAGTTTTACTGCTGAATACGGAC
ACTATTCTTATGATAACTGTGTCACTGCGAATCCT

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGGATTATAATTAATAATAA
CCTGGTGCATTTTCTCAGTTAACTAGAATAGAAACTAAAATACATTATTA
ATTATATGTTTAATTAAATATAGATATAAGATATTATTTCTTGGCACTTA
GAATCAGTGTGGGTTATAAACAAGCAAACAGCTGTCAGAATCTGCATAGA
GCATCCTTTCCACTGATTTATATTCAGTGGAGATAATTACCTACATACTA
AAGCAACTCTTGTGCCTTGGGTACTTTCTCTCCTCTCTCTTTTACACTCT
TCTCTGGAGAGACTTTTCTGTTGGAGACACCAGTTGTGGTTTTACTTGTT
GTTGGTTGGTAGGTTTGTTCGCTTTTTCTATTTTATAACGACTCAGACCT
AAGCAGAGACAACCTCGCTCTGTTTTGGATCAATAAGTCATTATAATGTA
TTAAACACTCACAAAAGAATTACACTTTCTAACCCCAACAATGTTTCATG
AGCTTGATATATCTCCTAATCCTACTTCCGACTACACGAATCCAAAAGGC
GCAGCTTCCCGTGCTTTCTTACCAAAATGCCTCCGAATTATCCGCGAGCC
GCACTAATACCGCCTCGAACCTTATTCCCTTGATACATTTACCCCGTATC
A

Query= MSMg01no126_n07.b1 MSMg01no126_n07.b1 CHROMAT_FILE:
MSMg01no126_n07.b1 PHD_FILE: MSMg01no126_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:22 2005
         (476 letters)



>mm_chr1_68801888_68802763
          Length = 876

 Score =  905 bits (468), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggcaattaacctaatcatgttgccttttagaaccaactcttagataattcat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattccaggcaattaatctaatcatgttgccttttagaaccaactcttagataattcat 617

                                                                       
Query: 65  catcaaagtggttaatatgagcaaaactgctttgtgaattatgcacttaaaatgttatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catcaaagtggttaatatgagcaaaactgctttgtgaattatgcacttaaaatgttatta 557

                                                                       
Query: 125 tctatataactcttataatagcttaatatctcagtcatttgatgttaagctataccacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctatataactcttataatagcttaatatctcagtcatttgatgttaagctataccacaa 497

                                                                       
Query: 185 ttattaattcaggtttgactatttttaagtgaacatgatttttgaaatctgaatatataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttattaattcaggtttgactatttttaagtgaacatgatttttgaaatctgaatatataa 437

                                                                       
Query: 245 aatgcttaaattgtaagctgactatttcctattgcaaaaagaatgtttattaaattcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatgcttaaattgtaagctgactatttcctattgcaaaaagaatgtttattaaattcagc 377

                                                                       
Query: 305 tcctgggatgatttggaaatatggggatattgacatatgactttaaatttaaaacattga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcctgggatgatttggaaatatggggatattgacatatgactttaaatttaaaacattga 317

                                                                       
Query: 365 aaattatatttagcatataatactatattatatggtacatgcttttgttaaaacacctca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaattatatttagcatataatactatattatatggtacatgcttttgttaaaacacctca 257

                                                               
Query: 425 aataacaacataactcttgtcatctaataagccatatttaactttctcagtc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aataacaacataactcttgtcatctaataagccatatttaactttctcagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no126_n07.g1 MSMg01no126_n07.g1 CHROMAT_FILE:
MSMg01no126_n07.g1 PHD_FILE: MSMg01no126_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:22 2005
         (372 letters)



>mm_chr1_68707040_68707811
          Length = 772

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatggattataattaataataacctggtgcattttctcagttaactagaatagaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatggattataattaataataacctggtgcattttctcagttaactagaatagaaact 260

                                                                       
Query: 61  aaaatacattattaattatatgtttaattaaatatagatataagatattatttcttggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatacattattaattatatgtttaattaaatatagatataagatattatttcttggca 320

                                                                       
Query: 121 cttagaatcagtgtgggttataaacaagcaaacagctgtcagaatctgcatagagcatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagaatcagtgtgggttataaacaagcaaacagctgtcagaatctgcatagagcatcc 380

                                                                       
Query: 181 tttccactgatttatattcagtggagataattacctacatactaaagcaactcttgtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccactgatttatattcagtggagataattacctacatactaaagcaactcttgtgcc 440

                                                                       
Query: 241 ttgggtactttctctcctctctcttttacactcttctctggagagacttttctgttggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgggtactttctctcctctctcttttacactcttctctggagagacttttctgttggag 500

                                                                       
Query: 301 acaccagttgtggttttacttgttgttggttggtaggtttgttcgctttttctattttat 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 acaccagttgtggttttacttgttgttggttggtaggtttgtttgttttttctattttat 560

                      
Query: 361 aacgactcaga 371
           || ||||||||
Sbjct: 561 aatgactcaga 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)