BAC Information

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BAC

Clone NameMSMg01-126P12
Chromosome1 (Build37)
Map Location 108,539,662 - 108,539,812
singlet/doubletsinglet
Overlap geneBcl2
Upstream genePign, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
Downstream geneLOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126P12.T7 (MSMg01no126_p12.b1)MSMg01-126P12.TJ (MSMg01no126_p12.g1)
ACCAG335641AG335642
length692706
length of high quality
(start - end)
34 (183 - 216)151 (156 - 306)
definitionCHROMAT_FILE: MSMg01no126_p12.b1 PHD_FILE: MSMg01no126_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:33 2005CHROMAT_FILE: MSMg01no126_p12.g1 PHD_FILE: MSMg01no126_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAAATCCGCGGAA
TTCCTGATCTTCTCACAACTTTTATCGTGAAGGAGGATTGGATTTTGTCA
AATGCTTTCTCAGCATCTAATTAAATGATCATGCAGGTTTTTTTTTCCTT
TGTGTTTGTTTATATAGTGGATTAGGGTGATGAATTTCCATATATTGAAC
CATCCCTGCATCCCTGGGATGAAGCCTACTTGATCATGATGGATAATCAT
TTTCAGGTGTTCTTGGATTCTGCTTGCGATAACTTTATTGAGTATTTTTG
CATTGATATTCCTAATGGATATTGGTCTGAAGCTCTGTTATTTTGTTGGC
TCTTTGCGTGTTTTAAGTATCTGCGTATTTGTGGCTTCATTAAATGAATT
CGCTAGTGTTCCTTCCCGCTCTATTTTGTGAAATATCTTGAAGTATTAGG
ACTTCTGATACAGCTTTGCATTAAATTCATCTGGTTCTGTGCTTCTTCTT
TTTCTTTTTTCCTTCTTTTCGGCTGCCATACTATTAATGACTGCTTCTAT
TTCTTTAGGTTTTATGGCACTGTTTAGATGGCCTTCTCAGATCCTAATTT
AACTCTAATACGTCTAATCTGCTTAGAAAATTGTTCTATTTCCTTTCCTA
TTTTCCTGCTTTGTTGCTTATGGCTTTTTGTTGTACCAACTT
TTGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTCTGATGGTTGCAATGTGTCCTTGTAG
AATGATCATAGAGTTCTTTGGATATACTTTGTAGGCCAGGATAGCAGCAG
GTCAGAACTGTCAGGTGTTTGCATGGACTAAGGCACTGCCTGGGTCTCAA
GGTCTCCAGTCCCAGGTCTGCTGCTTGCCACCTGAGTGGTTCTTCAGTGG
TTCTTTCTTTCATTTGTGCAGCGTCAAGTGGAGCAGTGTCTTCCTCATGT
GGTTGTTCAGAGTCTGTAGTATTGCCTAGTGCATCATAAATGCTGGGGGT
GTTGCCTGATGACGAAGCACACCCCAACTGAACGTATCCCATGAATAATA
TACCTGCCACTGAAATATGTTTTTCATTATAATTAGCACATGGGGTGGGG
GTCCATTCACGTACAATGAATGAGGTGTGGTACTGCATGTGGTTGTATGC
TTCTGATGTTTCCTTGTTCCATAGAACTCTTTTGCTATTGTTGTTGCTCT
TGCTGTTTTGCTCATTTGCTTTGTTTTGAAGATAGTGCCCAATGTACCTC
AAGCTTGCCTTGGATTTGTTGTGTATCCAAGGTCGTTTGTCTAATACTTC
TGCCTCTATCTCCCAAATGCTATTACTACCGACCTTGTACTTTCTGACCC
GTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_p12.g1 MSMg01no126_p12.g1 CHROMAT_FILE:
MSMg01no126_p12.g1 PHD_FILE: MSMg01no126_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:33 2005
         (151 letters)



>mm_chr1_108539462_108540012
          Length = 551

 Score =  261 bits (135), Expect = 1e-74
 Identities = 147/151 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgtcaggtgtttgcatggactaaggcactgcctgggtctcaaggtctccagtcccag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 351 aactgtcaggtgtttgcatggactaaggcactgcctgggtctcaaggtctccagccccag 292

                                                                       
Query: 61  gtctgctgcttgccacctgagtggttcttcagtggttctttctttcatttgtgcagcgtc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||
Sbjct: 291 gtctgctgcttgccacctgagtggttcttcagtggttctttctttcatttgcacagtgtc 232

                                          
Query: 121 aagtggagcagtgtcttcctcatgtggttgt 151
           |||||||||||||||||||||||||||||||
Sbjct: 231 aagtggagcagtgtcttcctcatgtggttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)