BAC Information

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BAC

Clone NameMSMg01-127J17
Chromosome8 (Build37)1 (Build37)
Map Location 13,953,200 - 13,953,416112,830,239 - 112,830,365
singlet/doubletsingletsinglet
Overlap geneLOC100041103, 2610019F03Rik
Upstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25
Downstream geneEG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127J17.T7 (MSMg01no127_j17.b1)MSMg01-127J17.TJ (MSMg01no127_j17.g1)
ACCAG336098AG336099
length716721
length of high quality
(start - end)
220 (45 - 264)127 (136 - 262)
definitionCHROMAT_FILE: MSMg01no127_j17.b1 PHD_FILE: MSMg01no127_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:25 2005CHROMAT_FILE: MSMg01no127_j17.g1 PHD_FILE: MSMg01no127_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:25 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,953,200 - 13,953,416)(112,830,239 - 112,830,365)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCCATAAAAGATCTCCTTGCTACCCAGGCCCACACTGCATGCCACTCCT
CCTCAGCAGATGCGCCCCTCAAGATGTCCTGACACCCTACCTCAAACCAC
CTTCAGTTGCTTCCAGCATCTAGATTTTGCTTCGTTTGTAACTGAATGAC
GAAAAATGAATCTACTGTTACACTGAATTACTGTAACCTTCGGAAGATGC
TTCTTGCGTTCTGACTAGGTGAGAGGTGCCACAGAGGTCATGTTCAGATA
GCCACAACACTCATGTTGCATGTATAGACCAGATGCGCACGTCCTATCAA
TCTCAAGTGACTGAGGCTGGCATGAACTTATAGGAGACTGGTCCACAGGA
CAGTGTCTACAGTGCACACCTCCATTCAGCATATATGCATCCAGCGGGCG
CATGTCTCCGCACCAAGCGCTCCACATGTCACCCGGACTCCATGTCGTGC
GTGGGTCACCGAGTACGAATCACTACCCACTCTCTGTGTTCCTTCCCCGT
CTATCAGATGGCTCTTGAATTATTGGTGCCCTATTATGCACTTGCTCGCT
TTGTCTACTATATAGTCTTGTGATGCGTCTTCGGATCATTTTCTCTCTTC
ATAGGTTCTTGTTAGTCGTCCTCTTGTTCCGCCGTCTGATGCTGCTCCGC
TTTTCCGCTGACCTGA
ATCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCAAATACCACTTGGCACACCACATTGCTATCA
AGTTTTCCTTTCCTTAAAAAATATAACCGAGAGAATGACAAATAGTGGCA
TAATTTTCTTATAACAAAAAACTAAGTACTTGAATACTTAATGTTATTAC
TTTGCTTTGTACTAAATAAAAAACCTAATATATTTGATTTATGTATCACA
CAACATAATTAGTTAACTGCGTGGAAAATTACATCAAAATATTTTGAGCG
AATAAAACCTGTTTTATATAAATTCACATAATACCCTTGTTATGATAGCT
TACTTAGGAATTTGATTTTTTTTACCCCCCCCCCCCCTTCTTTATTATGA
AGCTGTTATTTTGCATAACCACCCCATGTAAACAAAATAGAGAGTGTGAC
ATATGCTCACATATTCATGTTTCAGTACATGCATATGCTTCGGTTTGACA
GTGTAAGGAGTAAATCTATCGTCCTGATCTCTCCTTGCTCTTCTAATTTG
AAACTTGGCCACCCGCTGAGCTAACCATTTCGCCGTTCTAATAATCCAGT
CATCCTTTTGTTTTCACTCCCCCTTTACACTGGCGCTACTGTTTGACCCC
CGTCATGTTTTGTTTTTTACCGCTTTTTGCCTTCCCGCCCTTTATTGCCT
ACCTTCCCTTTTTTATCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_j17.b1 MSMg01no127_j17.b1 CHROMAT_FILE:
MSMg01no127_j17.b1 PHD_FILE: MSMg01no127_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:25 2005
         (220 letters)



>mm_chr8_13952997_13953616
          Length = 620

 Score =  381 bits (197), Expect = e-110
 Identities = 212/217 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccataaaagatctccttgctacccaggcccacactgcatgccactcctcctcagc 63
           ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 gaattccataaaagaactacttgctacccaggcccacactgcaggccactcctcctcagc 263

                                                                       
Query: 64  agatgcgcccctcaagatgtcctgacaccctacctcaaaccaccttcagttgcttccagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agatgcgcccctcaagatgtcctgacaccctacctcaaaccaccttcagttgcttccagc 323

                                                                       
Query: 124 atctagattttgcttcgtttgtaactgaatgacgaaaaatgaatctactgttacactgaa 183
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 324 atctagattttgcttcgtttgtaactgaatgaggaaaaatgaatctattgttacactgaa 383

                                                
Query: 184 ttactgtaaccttcggaagatgcttcttgcgttctga 220
           |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttactgtaaccttcggaagatgcttcttgcgttctga 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no127_j17.g1 MSMg01no127_j17.g1 CHROMAT_FILE:
MSMg01no127_j17.g1 PHD_FILE: MSMg01no127_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:25 2005
         (127 letters)



>mm_chr1_112830039_112830565
          Length = 527

 Score =  238 bits (123), Expect = 1e-67
 Identities = 126/127 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacaaatagtggcataattttcttataacaaaaaactaagtacttgaatacttaatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacaaatagtggcataattttcttataacaaaaaactaagtacttgaatacttaatgtt 260

                                                                       
Query: 61  attactttgctttgtactaaataaaaaacctaatatatttgatttatgtatcacacaaca 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attactttgctttgtactaagtaaaaaacctaatatatttgatttatgtatcacacaaca 320

                  
Query: 121 taattag 127
           |||||||
Sbjct: 321 taattag 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)