BAC Information

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BAC

Clone NameMSMg01-127M15
Chromosome1 (Build37)
Map Location 190,410,840 - 190,411,176
singlet/doubletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127M15.T7 (MSMg01no127_m15.b1)MSMg01-127M15.TJ (MSMg01no127_m15.g1)
ACCAG336233AG336234
length769709
length of high quality
(start - end)
190 (40 - 229)340 (68 - 407)
definitionCHROMAT_FILE: MSMg01no127_m15.b1 PHD_FILE: MSMg01no127_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:40 2005CHROMAT_FILE: MSMg01no127_m15.g1 PHD_FILE: MSMg01no127_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ATAGGTGCCAAAACAATATGAACTAACCAGTACCCGGCTGGAGCTTGTGT
CTCTAGCTGTATATGAATCAGAAGATGGCCTAGTTGGCCATCAGTGGAAA
GAGAGGCCCATTGGTCATGCAAACTCAGTACAGGGGAACGCCAGGGCCAA
GAAGTGGGAGTGGGTGGGTAGGGGAGTCCCTCTTCCTTTCTTCTTTTTTT
CTTTTCCCCCCCCTTTTTTTCTTCCTTTCCTTCTTCCTCCTTCCCCTATT
TTCCTTTTTTTTTTCTTTTCTTCCCTTCCTTTCTTTTCCCTCCCCTTTCT
CCTTTCTTTCCCCTTCTTTTCCCATTTCCCCTTTTCTTTCCTTCTTTTTT
TTTTTTTTATTCTCCCCCCCCTCTTCTTTTTTTGTCCCTCTCTCCGTCCC
CCTTTTTCTTTTTCTCTTTCTCTCCCCTCTTCCTTTTCCTTTTTTCCCCT
ACCTTCTCTCTTTCTTCCCTTTCTCCTTTTCTTTCCCTCCCCTCCTTCCT
CTTCCTGTCTTCTTTCCTCCTCCCTCTCCCCCTTTTTTCCCTTCCATTCT
TCCTTCTTCCCTTCCTTTTACTTTCTTTCTTCCTCTACCTTCTCCTCTTT
TCCCTTTCCTATTTCTCCTTCTTCCTCCCCCTCCTTCTTTCTCTTGTTCC
CTCCATTTTCTATTTCTTTCTTCTTTATTTCCTCCACTGTTTTCCCTCCT
CCTTTTCTTTCCTTTCCTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCATGTAGTACTGGGATCAAACCAGGGCCTCA
TGGATGCTGAAGAAGCACTCTAGTGTCTGAGTCGAATCCCTTGCCCTGAT
ACTACAGTTTGCGTACAGCAGTGCAGTGGCACTCCTTGTCCATAGTGTGA
CAGAGAAGAACCCTGATGAAAGGTTTGGGCCTTAGCCCCGAGTCTGAGTA
TTAGTAAGGCAGAGCAAGTGTGGATGGTTGGACAAAATTAAGATGGTATC
TGTAAGTCATGGCGTACTTTCTCTTATGCCATAGAATACACAGAAACAAA
AAAGCTATGAAAGTATTGGGAACCTTTACCAGTCAAGTTCTGAAGCAATT
GACTACCACCAAACCCCACAGCTGTTCCCCACGATGTGGCTAGATACCTT
GACACCTTGTGTGCATGCTTCCTTTCAAGAGCCTCATTGCCTGAGAAGCA
CAGGATCCTAAGAAATGAATTATCATGGACCGAATTGTTAACTACCCTTC
TAGCTCAACTGTAAACGCTGTGTCTAAGCATTCTTTCTTTAGGTACTTTG
TTGGTTTTTTCCCCTCTTCGATGCGGTTGGCCCACCATATTATCTTTTTT
TCCCCCTTATTAGCCGTTCTTTCCTCCTCACCTCGTGCTTCCTAAATCAG
TTCTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_m15.g1 MSMg01no127_m15.g1 CHROMAT_FILE:
MSMg01no127_m15.g1 PHD_FILE: MSMg01no127_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:40 2005
         (340 letters)



>mm_chr1_190410640_190411379
          Length = 740

 Score =  613 bits (317), Expect = e-180
 Identities = 332/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatgtagtactgggatcaaaccagggcctcatggatgctgaagaagcactctagtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatgtagtactgggatcaaaccagggcctcatggatgctgaagaagcactctagtgtc 260

                                                                       
Query: 61  tgagtcgaatcccttgccctgatactacagtttgcgtacagcagtgcagtggcactcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtcgaatcccttgccctgatactacagtttgcgtacagcagtgcagtggcactcctt 320

                                                                       
Query: 121 gtccatagtgtgacagagaagaaccctgatgaaaggtttgggccttagccccgagtctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccatagtgtgacagagaagaaccctgatgaaaggtttgggccttagccccgagtctga 380

                                                                       
Query: 181 gtattagtaaggcagagcaagtgtggatggttggacaaaattaagatggtatctgtaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 381 gtattagtaaggcagagcaagtgtggatggttggacaaaattaagatggcacctgtaagt 440

                                                                       
Query: 241 catggcgtactttctcttatgccatagaatacacagaaacaaaaaagctatgaaagtatt 300
           || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cacggcatactttctcttatgccatagaatacacagaaacaaaaaagctgtgaaagtatt 500

                                                
Query: 301 gggaacctttaccagtcaagttctgaagcaattgact 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaacctttaccagtcaagttctgaagcaattgact 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)