TTTGCGGCCGCTATACGACTCCTATTCCGAGAGATCCGCGGAATTCACTG
TATTCCAGCTTGGCCGGCCAGTGAAGCCCTGGTATCTGACTGTCTCTGCC
TCCTCAGCACTGAGATTATAATTACATAATCCAATGATTTGGCTTTTGTT
GCATATTTTCTGGGGAATGAACTCATGCCCCTTTGCTTGCAAGGCAAGCC
CTTTGCTTACTTAGCCATCTTCAAAGTGCCTTGTGTATCCCTTTTTAATG
TCCACTGTCAGATAGATGGAGCTTCTCTCATGTGATCCTCCCATTCTTTG
CCATTTTATTTATGCTGCCTCAATAAAGACAGCCTACACTATCTAATAGC
TAAACTTAAAAGAACAAACTGGACATGCATAGCTTATCCACACAGTTTTC
CTTCCCACCATCTTACAGGTCTTTCCTGAGCATAGATTGTTTTTTTTTTC
AGCCTGTTATGCTTCAGTCTGTTATGCCCAGTTTGAATGCTAATCATAGG
GTCTATCTGACCTTTAAACTATGTCCTGTGTCATACGTATACCTATACAT
ATTCACTCTTTCATATGTCACATCGATTTATTTACCATCAGCAATATATG
TTTTTGCTATTTTCACCCAACCCGAATTCCTTTCCTGCTTTCTATGCCCT
ATTTGCCCTCATCCCTTTCTTTATCAAAAATTTTATTTTTCTTTCAGCCT
TTTTCGCTCTCCTTTN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCGGAGCAAGTGCTGTAAGAGGCATG
TCTCTTTCAGGGAGCCACAGAGGCAGGCGCTGCCCATCTCCTGATGTGAG
AACAAACTTCTGATGGAGGAGGAGACTCCTAAGCTCCCCAAGTAAATACT
CAGCAGTGGAGTCATCACACACAGCAGTGACCTGGAGGTAGGTGGCTTGG
CTTCTGTGCCAGTTGAGGGTTATGGTTCTAAAGCAGATAAGAGCTGTTGC
TATGAAGACAGAACACAAGGATCCGCATAGGTCAGGTTGGAGTAAGCCAT
CTCTGGACCCCTGCATGGGGACACTTACTGCAAGACACAGTTCAACTTCA
CATAGATAGAGCCTCCCCCCACAATATCACAGCTGAAATTTCCACCCCTG
GCCAAAGAAGTAGAGAGGGTTGTCAGCCTGGGCACATCAAGTTGACTGGC
ATTATGTAAAGGAGACATGGGTCTCTGTTCCCCCAAGGAGGTAAGTGAGT
GTCAGATCTGCTCATATGTGTCACTCCCTTTGTCTCCACCACACTTCCCG
CTTGCTGCCTTTTTCGCCCATTCCTTTCCACTCTACTTCCTTTTTTACTT
TCCCTTTTCCATTTCTTCCTTTGTCCCCTTCTTTTACTTTTATCCCACCC
CTTTTTTCTTATTACCCTACCCCCTTCTTT

Query= MSMg01no127_o18.b1 MSMg01no127_o18.b1 CHROMAT_FILE:
MSMg01no127_o18.b1 PHD_FILE: MSMg01no127_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:51 2005
         (290 letters)



>mm_chr1_185670468_185671157
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccggccagtgaagccctggtatctgactgtctctgcctcctcagcactgagattataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gccggccagtgaagccctggtatctgactgtctctgcctcctcagcactgagattataat 591

                                                                       
Query: 61  tacataatccaatgatttggcttttgttgcatattttctggggaatgaactcatgcccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tacataatccaatgatttggcttttgttgcatattttctggggaatgaactcatgcccct 531

                                                                       
Query: 121 ttgcttgcaaggcaagccctttgcttacttagccatcttcaaagtgccttgtgtatccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttgcttgcaaggcaagccctttgcttacttagccatcttcaaagtgccttgtgtatccct 471

                                                                       
Query: 181 ttttaatgtccactgtcagatagatggagcttctctcatgtgatcctcccattctttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttttaatgtccactgtcagatagatggagcttctctcatgtgatcctcccattctttgcc 411

                                                             
Query: 241 attttatttatgctgcctcaataaagacagcctacactatctaatagcta 290
           |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 410 attttatttatgctgcctcaataaagacagtctacactatctaatagcta 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no127_o18.g1 MSMg01no127_o18.g1 CHROMAT_FILE:
MSMg01no127_o18.g1 PHD_FILE: MSMg01no127_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:51 2005
         (341 letters)



>mm_chr1_185547838_185548578
          Length = 741

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcggagcaagtgctgtaagaggcatgtctctttcagggagccacagaggcaggcgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcggagcaagtgctgtaagaggcatgtctctttcagggagccacagaggcaggcgctg 260

                                                                       
Query: 61  cccatctcctgatgtgagaacaaacttctgatggaggaggagactcctaagctccccaag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatctcctgacgtgagaacaaacttctgatggaggaggagactcctaagctccccaag 320

                                                                       
Query: 121 taaatactcagcagtggagtcatcacacacagcagtgacctggaggtaggtggcttggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatactcagcagtggagtcatcacacacagcagtgacctggaggtaggtggcttggct 380

                                                                       
Query: 181 tctgtgccagttgagggttatggttctaaagcagataagagctgttgctatgaagacaga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tctgtgccagttgagggttatggttctaaagcagctaagagctgttgctatgaagacaga 440

                                                                       
Query: 241 acacaaggatccgcataggtcaggttggagtaagccatctctggacccctgcatggggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacaaggatccgcataggtcaggttggagtaagccatctctggacccctgcatggggac 500

                                                    
Query: 301 acttactgcaagacacagttcaacttcacatagatagagcc 341
           ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 acttactgcaagacacagttcaacttcgcatagatagagcc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)