BAC Information

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BAC

Clone NameMSMg01-128K02
Chromosome1 (Build37)
Map Location 142,838,957 - 142,839,181
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128K02.T7 (MSMg01no128_k02.b1)MSMg01-128K02.TJ (MSMg01no128_k02.g1)
ACCAG336847AG336848
length708713
length of high quality
(start - end)
392 (129 - 520)229 (80 - 308)
definitionCHROMAT_FILE: MSMg01no128_k02.b1 PHD_FILE: MSMg01no128_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:47 2005CHROMAT_FILE: MSMg01no128_k02.g1 PHD_FILE: MSMg01no128_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGAAATAACCACAAAAACAAAAATCCCTGAAGTTTAAATTG
GATGGTAGTATAAATGAGCATAGACCCTATGGAAATCAGTAAGATAGTTC
TTCCAAAAATTAAATAAAATTACTATGTGACCCAGGAAAATTATTTTTTT
CTTAAAAGATTTGAAGTAAACATTCCAAAGATATGTCTTCCCTCTCGTTT
CCACTACTCTGATATTATGATATTTATGCTATGTGATCACATTATAAATC
TTGGCAGTCAGAAACACATGAATCCATAAATAAAATGCATATATACATGT
GAAAATAAGGAGTCTTATAAAACAATAGCCAAAATCCTGTCATTTGAAAG
AGCATTGATAAAATGAGAAAACATTATTCTAAATAAAAAGAAAAATTATT
AAAATAAAACAGTCCACATAAGGAAACAAATATCACAAATATTTGCACTT
ATGTGTGGAACTTGATACAAAGAAGTATATCATGAGAGGTAGAAGGAAGG
GAGAGCATGGTATTTAATGGCTACTAGACCATGACAAAACATAGAAGCTG
TCTGTTATCATTTATATCTAGTAGAAAGCTCAGTGGATATAGCATATGAT
ATCATAAAAGTGCATTTCAAAATACCTAAAAGTAAATTCCAAGTATTCTC
ACCATTAC
CCTTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATAACAATATCTGTAAGTT
CATGTTTATTTTTATTCCTAGATATAATTATTTGTTACTATTATTTCATA
ACCTCTTTTCATTTTATTTAAATCAAATATCTAACTCTCAGAGTTAAATG
TGTTTCATTTGTAATATCCACAGAGTTAAGTATAGTACTAAAAGCCAATG
AGTAGTGGCTTTCAAAGTAGGGAAAAGAAAACACATTATTTTAATGATAT
GAAACAGAATAACAAAGAGAATGGTTAAACTGAGGTAACATGTGTGATGG
GTTAGGGGCTACAATATAAATAAAATTAAATATCGCTAAAAAATATGTTA
AAAACATTCTACTTCCATAGTAGTTTCCTTAGATTGTGTGTGTATACTTA
TATATATACATATATAAACATATGTCAATGTTTTATAAACTTCATTTTTT
TAATTGACACAAATATAACGGGTACCAAGGCTTAACATCTATAAAGAGTT
TAGTGTTACACCCATTTGATGAAACATATTTTTAAAAATTATTACCATTA
TTATTACTATTATTTACACTCTCATATGTTTTTCTCCCTTCCCGGTTTTT
CTTTCCTGAATATTTTAACCCATTCCTTCCTCCCTTTTTCTTCTATAAAG
CTGTTCTCCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_k02.g1 MSMg01no128_k02.g1 CHROMAT_FILE:
MSMg01no128_k02.g1 PHD_FILE: MSMg01no128_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:47 2005
         (229 letters)



>mm_chr1_142838757_142839385
          Length = 629

 Score =  435 bits (225), Expect = e-127
 Identities = 225/225 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atataacaatatctgtaagttcatgtttatttttattcctagatataattatttgttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atataacaatatctgtaagttcatgtttatttttattcctagatataattatttgttact 260

                                                                       
Query: 61  attatttcataacctcttttcattttatttaaatcaaatatctaactctcagagttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatttcataacctcttttcattttatttaaatcaaatatctaactctcagagttaaat 320

                                                                       
Query: 121 gtgtttcatttgtaatatccacagagttaagtatagtactaaaagccaatgagtagtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtttcatttgtaatatccacagagttaagtatagtactaaaagccaatgagtagtggc 380

                                                        
Query: 181 tttcaaagtagggaaaagaaaacacattattttaatgatatgaaa 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaaagtagggaaaagaaaacacattattttaatgatatgaaa 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)