BAC Information

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BAC

Clone NameMSMg01-128M12
Chromosome1 (Build37)
Map Location 135,261,653 - 135,261,944
singlet/doubletsinglet
Overlap geneEtnk2
Upstream geneTmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1
Downstream geneSox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128M12.T7 (MSMg01no128_m12.b1)MSMg01-128M12.TJ (MSMg01no128_m12.g1)
ACCAG336962AG336963
length702715
length of high quality
(start - end)
293 (61 - 353)327 (63 - 389)
definitionCHROMAT_FILE: MSMg01no128_m12.b1 PHD_FILE: MSMg01no128_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:59 2005CHROMAT_FILE: MSMg01no128_m12.g1 PHD_FILE: MSMg01no128_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAAATTTGCGGCGCTAAACGACTCCTATTTCCAGAGATCCGCGGAATT
CGAGATTTACGACCTCTGGCCACCAAAGCCCTGGGAAGAGTGCCAACTTC
AGTACCCTCCTTGTCCCTCTGCCACTGGATAGAGCAGGAGGTACAGCTCT
GAGAGCCCTTGCCTGCCTTAATGAGAGGCAGCTGATCAGGGTATCTGTCT
GGGCAATTTCTAGCCCTCCCTGGCTACATTCTTGCCTGCAGTGGGGTTCT
TTCAGGGCCAGGATGGAGAAAGGAGGGGAGGGCCTCTCTCCAGTGTCTAG
TGCAGACGTGGCCTCTGTGCTAGATAGCATGGCCTGCAGGCGCAGCTAGG
CTTTTTTTTTGTGCCCCCCCCTCCCTGTGGCTGTTCCTTCCCACCCACCA
CCATGAGTGCCCCCTTATTAAAAAAAACAGTTTAGGACTAGCTGGCGTGT
CCTTATGTTCAGCATTCCAGTGAACGAATTCTGTTTCGACTGACGCTCCG
GTAAGACAGCGTAGGATTATGCCGTACCCTCCCACCCCTGACTGTCCTCT
CCCCATGCTAGCGCTCCTAACACGGCTTTACCCCTTAGCTACTGTTCCGC
TATTTGGTACATGACATGCGCGATTGTATGCTGTCCCCGTTGTATGTCTT
AGCTTATGGTACCTCTGTTTCCACCGCGTTAATGACTCTCCTATTTTCTA
TC
TGAAGTGGGAGGCCTGGCGGCGCCTGTTCTACAATGGAGGTGACCTATAG
AATTTCCGCGTAATTCTGGGAGCACTAGGTATGCATGTGGTACATATGAC
AAACATGCATATTGCGACAGTTTGAATATGCTTGGCCCAGGGAGTGGCAC
TATTAGGAAGTATATAGTCTTGTTGGAGTAGGTGTGTCATTGTGGGCATG
GACTTTTAGACCCTTGCCCTAGCTATCTGGAAGCCAGTATTCTGCTAGTA
ACCTTCAGATGAAGATGTAGAACTCTCAGCTCTACATCTGTACCATGCCT
GCCTGGATGCTGTCTTGCTCCCTCCTTGATAATAATGAACTGAACCCCTG
AACCTATAATTAAATGTTGTCCTTTATAAGACTTGCATTGGTCATGGTGT
CCGCCCAAAGCAGTAAAACCGTTAACTCACACACAGACAAACCCTTAACA
TTACATTTCTTACCAGACCGACTAATGAACAGATTTGAACAGAACAGACA
ATGAAAGGATAGGATTAGAACAGAAGACACTATATCATTTCCAGAGACAA
TATTATTATATATAATAGATTAGAACAGAATAGTAGACTAGAGCCCCGAT
ATGATTTTTCGTTTTGTACCTACTATCTTCTAAATCTCTCCTACCATTAT
GTACATACATGGTTTGACCTTATTGTTAAAAAGAAAAGTACGTAAAAGTT
TCAGCTACTTGGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_m12.b1 MSMg01no128_m12.b1 CHROMAT_FILE:
MSMg01no128_m12.b1 PHD_FILE: MSMg01no128_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:59 2005
         (293 letters)



>mm_chr1_135261453_135262145
          Length = 693

 Score =  503 bits (260), Expect = e-147
 Identities = 284/292 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacctctggccaccaaagccctgggaagagtgccaacttcagtaccctccttgtccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gacctctggccaccaaagccctgggaagagtgccaacttcagtaccctccttgtctctct 260

                                                                       
Query: 61  gccactggatagagcaggaggtacagctctgagagcccttgcctgccttaatgagaggca 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccactggatagagcaggagatacagctctgagagcccttgcctgccttaatgagaggca 320

                                                                       
Query: 121 gctgatcagggtatctgtctgggcaatttctagccctccctggctacattcttgcctgca 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgatcagggtgtctgtctgggcaatttctagccctccctggctacattcttgcctgca 380

                                                                       
Query: 181 gtggggttctttcagggccaggatggagaaaggaggggagggcctctctccagtgtctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 381 gtggggttctttcagggccaggatggagaaaggaggggagggcctctctccagcgcctag 440

                                                               
Query: 241 tgcagacgtggcctctgtgctagatagcatggcctgcaggcgcagctaggct 292
           ||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct: 441 tgcagacgtggccactgtgctagatagcatggcctggacgcgcagctaggct 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)