BAC Information

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BAC

Clone NameMSMg01-129J02
Chromosome1 (Build37)
Map Location 103,177,085 - 103,177,420
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J02.T7 (MSMg01no129_j02.b1)MSMg01-129J02.TJ (MSMg01no129_j02.g1)
ACCAG337544AG337545
length691701
length of high quality
(start - end)
649 (43 - 691)623 (79 - 701)
definitionCHROMAT_FILE: MSMg01no129_j02.b1 PHD_FILE: MSMg01no129_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:01 2005CHROMAT_FILE: MSMg01no129_j02.g1 PHD_FILE: MSMg01no129_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATGGAGCACTTTGAATGTGGCTGTCCATACAGCAATGTGCTCAATTA
TAAAAACATATTGAGTATTACAAACTTTTGCTAAGAACATGTAAAATATT
TCCTTAATAGTTCCTTCAAATTACTATGATGTGACATATTAAATGAAATA
TGTTGTGTTGTTAATGTGCATACATATATGTTCTTGTGTAAATGAATGTG
GAAACATGTAAAAGTGTGTGTTTGTGTGTGTGTATGTTTGTGTGTGTGTG
CACATGGAGGCAGCGATAACTCTATGATAAGTGACTTCCTTTATCATCTC
CACATTAATATTTGAAACAGTATGCCCTGGTAACATGGAGCACACCAATT
CAGCAAGTATGAACAAGGGATTTCTCTGTCTCTGTATCTTCTGCATTGAG
ATTACAGGAATAAATGGATATATCTTGCTTGTTGAATGGTCACTAGGGAT
CAATACTCAACACTTTCATTCATATTCAGAAAGCAACCTACACAGTGAGA
CATCTGTTGAGACCTCTCATTAATTATTTTTACTGTGGCTGCTAGAATAT
TTAAAAGGACATATCTATCTCTCATTTGAGCTCTTCCAACCCAATATTTT
TTTCTTTCTTTTGTAGTCTCTTTATGGCATCTCATTTTTCA
NNNACAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGTTAAGAGCTAAACAAAGA
ATTCTCACCTGAGGAATACCGAATGGCGGACATGCACCTGAAAAGATGTT
CAGCATCCTTAACCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCATACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAG
ATGCTGGCGATGATGTGGAGAGAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGGATACTGCAATACCTCTGCTAGGCAT
TTATCCAGAAGATGTTCCAACCAGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGTCTTATTTATAAGAGCCAGGAGCTGGAAAGAACCCAGACAT
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
ATACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGATAACCCAATCCCAAAGG
AACTTACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGATACTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j02.b1 MSMg01no129_j02.b1 CHROMAT_FILE:
MSMg01no129_j02.b1 PHD_FILE: MSMg01no129_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:01 2005
         (649 letters)



>mm_chr1_103176372_103177420
          Length = 1049

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Minus

                                                                        
Query: 314  taatatttgaaacagtatgccctggtaacatggagcacaccaattcagcaagtatgaaca 373
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 taatatttgaaacagtatgtcctggtaacatggagcacaccaattcagcaagtatgaaca 990

                                                                        
Query: 374  agggatttctctgtctctgtatcttctgcattgagattacaggaataaatggatatatct 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  agggatttctctgtctctgtatcttctgcattgagattacaggaataaatggatatatct 930

                                                                        
Query: 434  tgcttgttgaatggtcactagggatcaatactcaacactttcattcatattcagaaagca 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  tgcttgttgaatggtcactagggatcaatactcaacactttcattcatattcagaaagca 870

                                                                        
Query: 494  acctacacagtgagacatctgttgagacctctcattaattatttttactgtggctgctag 553
            || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 869  acttacacagtgagacatctgttgagacctctcattaattatttttactgtgactgctag 810

                                                                        
Query: 554  aatatttaaaaggacatatctatctctcatttgagctcttccaacccaatatttttttct 613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  aatatttaaaaggacatatctatctctcatttgagctcttccaacccaatatttttttct 750

                                                
Query: 614  ttcttttgtagtctctttatggcatctcatttttca 649
            ||||||||||||||||||||||||||||||||||||
Sbjct: 749  ttcttttgtagtctctttatggcatctcatttttca 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)