BAC Information

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BAC

Clone NameMSMg01-129N19
Chromosome1 (Build37)
Map Location 182,069,241 - 182,069,469
singlet/doubletsinglet
Overlap geneCdc42bpa
Upstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
Downstream geneCabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129N19.T7 (MSMg01no129_n19.b1)MSMg01-129N19.TJ (MSMg01no129_n19.g1)
ACCAG337761AG337762
length670676
length of high quality
(start - end)
229 (123 - 351)282 (80 - 361)
definitionCHROMAT_FILE: MSMg01no129_n19.b1 PHD_FILE: MSMg01no129_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:25 2005CHROMAT_FILE: MSMg01no129_n19.g1 PHD_FILE: MSMg01no129_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAATGACTCTCCTGCCTGCCATAATGAGTCTCATGTGTGCTGTG
TCTGCTCCCCTGATTGTCCCGAGTGGCTTACTCCTTGCTCCTGCGATGAG
TCATGAGTCCCCTACTCCCTCTGCCTTTAATTCTTGACTCCGTCTTGCAT
TCCTTGTAACAGACAGTCTTGCTGTTGTCCAGGCTATCCGTGACCGTGTG
GGCTGAGGAATGGCCCTTCGCTAGCGCTAGCTCCTCACTTTTCAGGTCTG
CCACATCGCCCTTGCTGATATTCCCTGTGTATTTCACTGTGCTTCAGATA
CTATTTTTATGCCCCAATGCGCATTTTTAGCAATGGCTATGCCTGAATAG
GAGACAAGTGGGACCCAACATTCAGAAGCAATGCCTGAAGCTGTGGGAGA
AAATAACCACCCCCAGGACAATGCCCGAGGTTCCAGGAAAGGAGGGAGGT
GTTGAGGGCACACGAAGAGTCTGGACACTGGTGCTAGGGAGACAGACTCT
CAGGTGTTGGCTGCTTTAGTGCGTTGTCCAGGGGCCGTGGAAGAGTTACC
CCTTCACTTACACTCAGTCACTTTGCAGTTTCAGACGATGACTTGAACAA
CGCATAATTAGGACTCTTTT
NCCAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATAATTTTAGGAAGAAAAT
TTAAGGAGATGGTTTTGGTTGTTCCGCCAGAAAGATATAATGAAGTTAGA
ATCAAGAACAGGATGTGCCCCTCCTCATAGAACAGTAAGTGAAGCTTGCA
TAATCAGGAATACAACGAGCTTTCACAATTACACTAAGAAGAGACAGGCT
TGGGACAGATTTGTGATCAAGGAAAAACATTCATTCTAGGTCAGGTCCAA
GGATGAAGTCACAGGTGTGCACTATGATAAAGGCTATGTGAAACTGTTGC
TTTGAACTTATTAATGAGCTCACAGAATGAAACATAGTTTTGAACTAATT
GAGCATCCTTCTGTAACTCCCTTTTTATGTAACATTTTATCTGTGAGATA
ATTTTAAAAAGAACTTTTCTCTAAGAAGGTATAAATTGCCAGGGAGAAGA
AATAGTGTGGGTTCTGGGTCTCCCACTCCATTTACCAAATGTACATACAC
ACACATACATGCATACATACATATACATATTCTGTCTATATGTATATGCA
TACATATGAATGTAGATATATGTGTATGAATATAACTATGCTTGTGTACT
TATGAAATTGATGTGACAGGTGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_n19.b1 MSMg01no129_n19.b1 CHROMAT_FILE:
MSMg01no129_n19.b1 PHD_FILE: MSMg01no129_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:25 2005
         (229 letters)



>mm_chr1_182069041_182069669
          Length = 629

 Score =  420 bits (217), Expect = e-122
 Identities = 226/229 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggcttactccttgctcctgcgatgagtcatgagtcccctactccctctgcctttaatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 429 gtggcttactccttgctcctgcgatgagtcatgagtcccctactccctctgcctttaagt 370

                                                                       
Query: 61  cttgactccgtcttgcattccttgtaacagacagtcttgctgttgtccaggctatccgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttgactccgtcttgcattccttgtaacagacagtcttgctgttgtccaggctatccgtg 310

                                                                       
Query: 121 accgtgtgggctgaggaatggcccttcgctagcgctagctcctcacttttcaggtctgcc 180
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 309 accatgtgggctgaggaatggccctttgctagcgctagctcctcacttttcaggtctgcc 250

                                                            
Query: 181 acatcgcccttgctgatattccctgtgtatttcactgtgcttcagatac 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acatcgcccttgctgatattccctgtgtatttcactgtgcttcagatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)