BAC Information

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BAC

Clone NameMSMg01-129P16
Chromosome1 (Build37)
Map Location 56,781,470 - 56,890,692
singlet/doubletdoublet
Overlap geneSatb2
Upstream gene9130227L01Rik, Hsfy2
Downstream geneEG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129P16.T7 (MSMg01no129_p16.b1)MSMg01-129P16.TJ (MSMg01no129_p16.g1)
ACCAG337850AG337851
length697710
length of high quality
(start - end)
485 (35 - 519)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no129_p16.b1 PHD_FILE: MSMg01no129_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:34 2005CHROMAT_FILE: MSMg01no129_p16.g1 PHD_FILE: MSMg01no129_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,781,470 - 56,781,950)(56,890,460 - 56,890,692)
sequence
GCGGCCGCTAAACGACTCCTATATCCAGAGAATCCGCGGAATTCTAGGGA
GTCTCTTAACCTCACCACGCCAACTTGGGTCCAAAGGAGCTCAGGCAAAG
ATTCAGCCCATCCATCCTTAGTGTGCCAAGCTTAACTGTGTACCCACCCT
CACATCCCACATGCTCTTTCCAATTGCAACCAGACCCTGCCTCTTCGTGT
TTACAGATCAAATTAATATCTTGTTCATAAAGATATTTTTAGTCTTAAAT
ACAAAATTTGTAAACAACTCCAGTTTGACTGGAGAATTATTCACTTATTT
TTTTAAAGCCAGGTACAAAGAGCTCAGTTCACTCGGGGGAATCCAGGAAG
AGAGAATAAGAGGAAAGAGAAAACAGGGTGCACAGAACATGGTAGGCATA
CCAGGCGACGTGGAACAAGACTCTGCATCAGGAAGGAGGTCACTTGGAGT
TGAAGGTACAAAGACTCACATATCAGAAGCCAAATAATAACATAAGAACT
AAGAAAGCAGCTGGTAAGTCAGTAGTAGAGGTAATATGAACACAATAAGT
CTCTGTTTAGTCCATACCATCATTCACTGAACTCACAAACCGATGCTAAC
TGTATTCTGAGTATATGATGTTAAATTCTAGACTAAAAAGAAAAGAGTCA
TTCTTCCGCAGAACGGGGGAAACATCTAGAGATGTTAATTAAAATGA
AATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTTGTATAAAGAACCCCCGA
GAAAACACTTTGGGACCAGTAGATCTTTATTAAAATATAATTTATTTTCT
GGTGGTGATAAAAATTTATCTTCATTTTTTCATGTGCATGGCACTTGAAA
ATTAACCATTACCTGTCTCTTGAGTTGTGGGGGGAAGGGCTATAGAAGTA
CTTGGAAAACACATTTGCAAGCAAGTGGTAAGATACCTTGTTTTCATTCT
TCCTAACTCTCTAACTCTCCCAAGCTCCCAGTTTATTGCAAGAAAAGATC
AGGTCTGCGCTTTTTTTTTCTCTCACCCCCCCCAACAAGGCAGTGTTGTG
TTACAGATTAGTTTATAACTCCCCAAAGAATTCACAGTTCAGTGCCCAGA
GCTGCTGCACACAGGCCTGGGTTTTTGTCTCCTCTCGGTGCTGCAGCCGG
CAGTTGAAGGGGAAAATGGAATGATCAGGTTATTAACATGGAGGCCGCGA
GGAGGAGGCTGCCCAATGAGAACAGCTGGTGTTGCTGTCTTGGCTGATGC
AGCGGAGATAATCAAAATCTTGCCTTTTTTTTTTGGGTAAAGGCAAAAAA
CACAGTGGAGAGTTATACAAACAACAGCTTATGATATGATATGGGGCTTT
TACCATGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_p16.b1 MSMg01no129_p16.b1 CHROMAT_FILE:
MSMg01no129_p16.b1 PHD_FILE: MSMg01no129_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:34 2005
         (485 letters)



>mm_chr1_56781266_56782150
          Length = 885

 Score =  899 bits (465), Expect = 0.0
 Identities = 477/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagggagtctcttaacctcaccacgccaacttgggtccaaaggagctcaggcaa 64
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagggagtctgttaacctcaccatgccaacttgggtccaaaggagctcaggcaa 264

                                                                       
Query: 65  agattcagcccatccatccttagtgtgccaagcttaactgtgtacccaccctcacatccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agattcagcccatccatccttagtgtgccaagcttaactgtgtacccaccctcacatccc 324

                                                                       
Query: 125 acatgctctttccaattgcaaccagaccctgcctcttcgtgtttacagatcaaattaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatgctctttccaattgcaaccagaccctgcctcttcgtgtttacagatcaaattaata 384

                                                                       
Query: 185 tcttgttcataaagatatttttagtcttaaatacaaaatttgtaaacaactccagtttga 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttgttcataaagatatttttggtcttaaatacaaaatttgtaaacaactccagtttga 444

                                                                       
Query: 245 ctggagaattattcacttatttttttaaagccaggtacaaagagctcagttcactcgggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggagaattattcacttatttttttaaagccaggtacaaagagctcagttcactcgggg 504

                                                                       
Query: 305 gaatccaggaagagagaataagaggaaagagaaaacagggtgcacagaacatggtaggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaatccaggaagagagaataagaggaaagagaaaacagggtgcacagaacatggtaggca 564

                                                                       
Query: 365 taccaggcgacgtggaacaagactctgcatcaggaaggaggtcacttggagttgaaggta 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taccaggcgatgtggaacaagactctgcatcaggaaggaggtcacttggagttgaaggta 624

                                                                       
Query: 425 caaagactcacatatcagaagccaaataataacataagaactaagaaagcagctggtaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaagactcacatatcagaagccaaataataacataagaactaagaaagcagctggtaag 684

            
Query: 485 t 485
           |
Sbjct: 685 t 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no129_p16.g1 MSMg01no129_p16.g1 CHROMAT_FILE:
MSMg01no129_p16.g1 PHD_FILE: MSMg01no129_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:34 2005
         (234 letters)



>mm_chr1_56890239_56890872
          Length = 634

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattaaaatataatttattttctggtggtgataaaaatttatcttcattttttcatgtgc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 454 tattaaaatataatttattttctggtagtgataaaaatttatcttcattttttcatgtgc 395

                                                                       
Query: 61  atggcacttgaaaattaaccattacctgtctcttgagttgtggggggaagggctatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atggcacttgaaaattaaccattacctgtctcttgagttgtggggggaagggctatagaa 335

                                                                       
Query: 121 gtacttggaaaacacatttgcaagcaagtggtaagataccttgttttcattcttcctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtacttggaaaacacatttgcaagcaagtggtaagataccttgttttcattcttcctaac 275

                                                                
Query: 181 tctctaactctcccaagctcccagtttattgcaagaaaagatcaggtctgcgc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctctaactctcccaagctcccagtttattgcaagaaaagatcaggtctgcgc 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)