BAC Information

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BAC

Clone NameMSMg01-130A19
Chromosome1 (Build37)
Map Location 83,421,714 - 83,422,354
singlet/doubletsinglet
Overlap genenone
Upstream geneRhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A19.T7 (MSMg01no130_a19.b1)MSMg01-130A19.TJ (MSMg01no130_a19.g1)
ACCAG337903AG337904
length712642
length of high quality
(start - end)
640 (73 - 712)---
definitionCHROMAT_FILE: MSMg01no130_a19.b1 PHD_FILE: MSMg01no130_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:40 2005CHROMAT_FILE: MSMg01no130_a19.g1 PHD_FILE: MSMg01no130_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCGGCGGA
ATTCTTTCTCTCTTTCCCTTGAGTTTAAATATTAAATATTCATGCTTACT
CTATAACTCCAAATTCATTCTAAAATAATCCTTTTCAAATCTTATAGGTA
TTGTTTGTTTTCTACTCTTTTAATATTTAATAAAAAATACCAACTCTGCA
GCTATGTATGTTCCCACAGCATTGTGATCCTTGTGGGTTAACCCAACAGA
TATAACTGATGTTTTACCATTATTCCTTTTATGAAGTTTGCCATCCTTGC
CACAGCAGAGTAACTATCATGCATGCTGGCATCACATCGACACAAGCATA
TTTTCTCTGTACACTCGCCATTCAGCAGAGGGTAGCTTCATGGTTTATAG
AATTTTCAATTGGTAAAAGCAATTGTTCAGTGTTTCAGGGTGTGGTCTAC
TGGAGCAAAGGTACAAAAGGAGTTATATGGCTTCATAAAACACATAGTTT
GTAACAGAAATGTGTGAAGTATCTACTGCTGCTCTAACAATCTACCACAA
ACTTAGTGGTCAAAATGGCTCAAATTTACTTCTTTACAGTTTTGAAGGTC
AGAATCTGGTATGAGCATCCTGAACTTAATATTGGTGACTAGGGTTTGAT
CTTTCTAGAGGCTTCAAGAGAGCATGTATTTCTACTGTATACATCCGTGT
CTGCCTGCATCC
CATGAGTGNTNCCTGNNCCGCTGCCTCCAAATACGTGCCNNNNANGGTTT
CCACAAACCCNTGNNATACCNNTGGNNANNNCCTTGAAAATGTTTCCCCC
CTAATCTCGGGAAAGNNNTCAAACNCCCTGAAATTCCCCTCCCCATCAAA
AGTCTAAATCANANTTCNGTGACANCAATGCTGCCAAGATGTGCAAAAGA
AGACACTCCTCCATTTTNNTGNNCTTCCNGCTTGGTCCCCCCTCTNCTTT
TCCTTCTGCCNNCTCCTCANNNCTCTTTTTCTTTTTACTACTCGGAGGAC
GGGGGAACCCCCCCTTTTNNTTANCATCCCCCCCCCCCCCCCAAAAAGTG
GGGGGGTTTNCCCCTTTTNNNTTTTAGAACATAGGTAGGTAANNCCCCCC
CCCCCCCCCCCCTTNNGGGGGGGGGGNNNNNNNNNNNNNNNCCCCCTNCC
CCCTNCNCCNNNAANNNNNNNNCCCCCTTNCTCACGGGGGGGGGGGAAGA
GAGAAGTCCAAGAAGGTCTAGNNNNNNNNNCNCGTTCCCCAGTGTGGAAG
AGTGGAGGGCCCCCCNNNNNNNNNNNNNNNNTNNNNNTTGGGGGGGGAGA
ACGGGAGAAAAAANNNNGGGAGACACCCTTATCCCACACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a19.b1 MSMg01no130_a19.b1 CHROMAT_FILE:
MSMg01no130_a19.b1 PHD_FILE: MSMg01no130_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:40 2005
         (640 letters)



>mm_chr1_83421514_83422554
          Length = 1041

 Score = 1100 bits (569), Expect = 0.0
 Identities = 623/641 (97%), Gaps = 1/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttaaatattaaatattcatgcttactctataactccaaattcattctaaaataatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 gtttaaatattaaatattcatgcttactctataactccaaattcattctaaaataattct 260

                                                                       
Query: 61  tttcaaatcttataggtattgtttgttttctactcttttaatatttaataaaaaatacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaaatcttataggtattgtttgttttctactcttttaatatttaataaaaaatacca 320

                                                                       
Query: 121 actctgcagctatgtatgttcccacagcattgtgatccttgtgggttaacccaacagata 180
           ||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 321 actgtgtagctatgtatgttcccacagcattgtgaaccttgtgggttagcccaacagata 380

                                                                       
Query: 181 taactgatgttttaccattattccttttatgaagtttgccatccttgccacagcagagta 240
           | ||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||
Sbjct: 381 ttactgatgttttgccattattccttttatgaagcctgccatccttgccacaccagagta 440

                                                                       
Query: 241 actatcatgcatgctggcatcacatcgacacaagcatattttctctgtacactcgccatt 300
           ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 actatcatgcaggcaggcatcacatcgacacaagcatattttctctatacactcgccatt 500

                                                                       
Query: 301 cagcagagggtagcttcatggtttatagaattttcaattggtaaaagcaattgttcagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 cagcagagggtagcttcatggtttatagaattttcaattggtaaaagtaattgttcagtg 560

                                                                       
Query: 361 tttcagggtgtggtctactggagcaaaggtacaaaa-ggagttatatggcttcataaaac 419
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tttcaggctgtggtctactggagcaaaggtacaaaaaggagttatatggcttcataaaac 620

                                                                       
Query: 420 acatagtttgtaacagaaatgtgtgaagtatctactgctgctctaacaatctaccacaaa 479
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 acatagtttataacagaaatgtgtgaagtatctactgttgctctaacaatctaccacaaa 680

                                                                       
Query: 480 cttagtggtcaaaatggctcaaatttacttctttacagttttgaaggtcagaatctggta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttagtggtcaaaatggctcaaatttacttctttacagttttgaaggtcagaatctggta 740

                                                                       
Query: 540 tgagcatcctgaacttaatattggtgactagggtttgatctttctagaggcttcaagaga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagcatcctgaacttaatattggtgactagggtttgatctttctagaggcttcaagaga 800

                                                    
Query: 600 gcatgtatttctactgtatacatccgtgtctgcctgcatcc 640
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcatgtatttctactgtatacatccgtgtctgcctgcatcc 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space:   649530
Effective search space used:   649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)