BAC Information

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BAC

Clone NameMSMg01-130C19
Chromosome1 (Build37)
Map Location 163,026,436 - 163,027,045
singlet/doubletsinglet
Overlap geneKlhl20
Upstream geneTnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl
Downstream geneAnkrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130C19.T7 (MSMg01no130_c19.b1)MSMg01-130C19.TJ (MSMg01no130_c19.g1)
ACCAG337994AG337995
length723722
length of high quality
(start - end)
608 (46 - 653)240 (125 - 364)
definitionCHROMAT_FILE: MSMg01no130_c19.b1 PHD_FILE: MSMg01no130_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:51 2005CHROMAT_FILE: MSMg01no130_c19.g1 PHD_FILE: MSMg01no130_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATACGCGGAATT
CTTTTAATATTTACCAAGTAAAACCTTAGAGCTACAAGCTTCTTTGCCTT
TTCTATCTAGACCAGTGGTTCTCAAACTTCCTAATGCAGCAATCCTTTAA
TACAATTCCTCATGTTGTGGTGACCCCCCAACCATAAAATTAATTACTAC
TTCATAACTGTTATGAATCGCAATGTAAATAACTGATGTGTGACACACAC
CCCCCCAAAGGAGTCATGATCCACAGGTTGAGAATCACTGGTCTAGACAT
AATAGCTATTTTTATCTAAGGATATTGTCAGTGGCACACCATGAGATTCA
TTGTTATGTATCTTCGGTGGCTCACAAGACACTAGGTAAACAGCATGGGC
GAGCACGCCACTAATCCCAGCACTTGGGAGACAAAGACAGAAGGATCGAT
CATGAGTTTGAGGCTGGGCTACATAGTGAGTTCTAGGCTAGCACCACAGA
GCAAGACTCCATCTAAAAAAAGAACAAGACATGAATAAATAATCAAATAA
ATTATATGAGAAAAATAAAAGTAAAAAACCTGTCTAACTATAACAATGAA
TTTTTAATACTAAACCATTCTTTTAAGTCATAATCAAGTTCCACCCTACT
AGAAGATAAGGAAAGTGCATATAACTAGTTATGTAGCCACAACTAGAAGT
TAACACATGCTCGTTCCTTAAAA
CTGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCCGAATACAAGAAACAGACATTAAAAGCAATGCATATTG
AGACCTATAATTCCATTACTGCGGGGTAGGGTAGAACACAGAGTGTTCCA
GGACAGCCTGGGCTATAGAACAAGATCTTGTCCCAAAAGTAAATAAAATA
GAGCCTAGAGAGACATCTCAGCCGTTAAGAGCCTGTAGTATTATCATTGC
AGAAGACTCAGGGTCAGCTTCTAGACTCCACGGTAGACAGCTCATGACCC
CACAGGCACCTGCACTCATGTGTTCATACACACACACACACACACACACA
CACACACACATTTTTATTTCTCCCACCCCCCCCCACACACAGACACAGAC
ACACACAGCCTCTTACACACCGCCACAAATACAAAGACACACACAGACGC
GGGCATACACACACAGACACACACAGACACACACAGACACACACACACAC
ATACAGACACACAGACAGACACACACTCAGACACACAAACAGACACAGAC
ACACAGACACAGACACACACAGCCACATACACACAGCCACACATACTCAG
CCACACTCAGACACAGCCATACACACATAGATACACATACATAGAGACAC
ACACACACTTGATCACTCACTCTCTGAGAGACTCATACCCATACTATCTT
GAATAAGATTAACATGTGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_c19.b1 MSMg01no130_c19.b1 CHROMAT_FILE:
MSMg01no130_c19.b1 PHD_FILE: MSMg01no130_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:51 2005
         (608 letters)



>mm_chr1_163026253_163027260
          Length = 1008

 Score = 1098 bits (568), Expect = 0.0
 Identities = 599/614 (97%), Gaps = 10/614 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcttttaatat-----ttaccaagtaaaaccttagagctacaagcttctttgcctt 55
           |||||||||||||||     |    |||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattcttttaatataagaat----aagtaaaaccttagagctacaagcttctttgcctt 738

                                                                       
Query: 56  ttctatctagaccagtggttctcaaacttcctaatgcagcaatcctttaatacaattcct 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttctatctagaccagtggttctcaaacttcctaatgcagcaatcctttaatacaattcct 678

                                                                       
Query: 116 catgttgtggtgaccccccaaccataaaattaattactacttcataactgttatgaatcg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 catgttgtggtgaccccccaaccataaaattaattactacttcataactgttatgaatcg 618

                                                                       
Query: 176 caatgtaaataactgatgtgtgacacacacccccccaaaggagtcatgatccacaggttg 235
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caatgcaaataactgatgtgtgacacacacccccccaaaggagtcatgatccacaggttg 558

                                                                       
Query: 236 agaatcactggtctagacataatagctatttttatctaaggatattgtcagtggcacacc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaatcactggtctagacataatagctatttttatctaaggatattgtcagtggcacacc 498

                                                                       
Query: 296 atgagattcattgttatgtatcttcggtggctcacaagacactaggtaaacagcatgggc 355
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 497 atgagattcattgttatgtatcttcggtggctcagaagacactaggcaaacagcatgggc 438

                                                                       
Query: 356 gagcacgccactaatcccagcacttgggagacaaagacagaaggatcgatcatgagtttg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagcacgccactaatcccagcacttgggagacaaagacagaaggatcgatcatgagtttg 378

                                                                       
Query: 416 aggctgggctacatagtgagttctaggctagcaccacagagcaagactccatct-aaaaa 474
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 377 aggccgggctacatagtgagttctaggctagcaccacagagcaagactccatctaaaaaa 318

                                                                       
Query: 475 aagaacaagacatgaataaataatcaaataaattatatgagaaaaataaaagtaaaaaac 534
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagaacaaaacatgaataaataatcaaataaattatatgagaaaaataaaagtaaaaaac 258

                                                                       
Query: 535 ctgtctaactataacaatgaatttttaatactaaaccattcttttaagtcataatcaagt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgtctaactataacaatgaatttttaatactaaaccattcttttaagtcataatcaagt 198

                         
Query: 595 tccaccctactaga 608
           ||||||||||||||
Sbjct: 197 tccaccctactaga 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)