Query= MSMg01no130_c22.b1 MSMg01no130_c22.b1 CHROMAT_FILE:
MSMg01no130_c22.b1 PHD_FILE: MSMg01no130_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:51 2005
(279 letters)
>mm_chr1_106781439_106782118
Length = 680
Score = 410 bits (212), Expect = e-119
Identities = 260/276 (94%), Gaps = 1/276 (0%)
Strand = Plus / Minus
Query: 5 gaattctgggattatttcc-tcttaaagtacatatattgttttcccgtattgttcagcag 63
|||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||
Sbjct: 480 gaattctgggattaaaaccatcttaaagtacatatattgttttcccatatttttcagcag 421
Query: 64 aaattatggggtatagtaccggttctgaagcaatgtatatatcttacaatatgcctgcat 123
|||||||||||| ||||| ||||||||| |||||||||||||||||||||||| || ||
Sbjct: 420 aaattatggggtgtagtagaggttctgaaacaatgtatatatcttacaatatgcttgtat 361
Query: 124 attctttgagttttcttgcctttaagagctgtggtgtaattctctttgcttatagagagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 attctttgagttttcttgcctttaagagctgtggtgtaattctctttgcttatagagagc 301
Query: 184 tttaggatattttcctaacaagttctccctgcctctaatagagattgtggccactggaat 243
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 300 tttaggatattttcctaacaagttctctctgcctctaatagagattctggccactggaat 241
Query: 244 tcagctactatgctttgaggaatccacgctgcttgg 279
|||||||| ||||||||||||||||| |||||||||
Sbjct: 240 tcagctacaatgctttgaggaatccaggctgcttgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space: 181170
Effective search space used: 181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_c22.g1 MSMg01no130_c22.g1 CHROMAT_FILE:
MSMg01no130_c22.g1 PHD_FILE: MSMg01no130_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:52 2005
(528 letters)
>mm_chr1_106659774_106660701
Length = 928
Score = 980 bits (507), Expect = 0.0
Identities = 519/523 (99%)
Strand = Plus / Plus
Query: 1 tccaataatgaatatttatggaaaagatgagctctgaaaccacaaaagtgattttaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaataatgaatatttatggaaaagatgagctctgaaaccacaaaagtgattttaaaat 260
Query: 61 gctattgtcatcagtcctgctaaattattttcattgtcaaccccaaaatatcgtcagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctattgtcatcagtcctgctaaattattttcattgtcaaccccaaaatatcgtcagtgg 320
Query: 121 acaatacagaaataatctagagcagcaaattgcattaggagggtattagctgactcagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatacagaaataatctagagcagcaaattgcattaggagggtattagctgactcagga 380
Query: 181 gactaattataatgaggtattgagctgattatttctcatctcattcttaaaaccataaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactaattataatgaggtattgagctgattatttctcatctcattcttaaaaccataaac 440
Query: 241 cacactgtgcaggtggtggctgccaatcagggttcatgtgttaaggcgaacatatccttg 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cacactgtgcaggtggtggctgccaatcagggttcatgtgggaaggcgaacatatccttg 500
Query: 301 aacaagggtcaggaactgtggttgtcatcaacttgctaaccttgggagctcttaataaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaagggtcaggaactgtggttgtcatcaacttgctaaccttgggagctcttaataaag 560
Query: 361 ctcattccccacatgggaaacagatgccttcctcgggaaatgtggtagtggtggtgtctg 420
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctcataccccacatgggaaacagatgccttcctcgggaaacgtggtagtggtggtgtctg 620
Query: 421 aagcttctcagatgcagaaaaccacagaaagactacatgaacacaggcacacatgcatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcttctcagatgcagaaaaccacagaaagactacatgaacacaggcacacatgcatga 680
Query: 481 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
