BAC Information

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BAC

Clone NameMSMg01-130F21
Chromosome1 (Build37)
Map Location 26,576,689 - 26,577,023
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik, LOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130F21.T7 (MSMg01no130_f21.b1)MSMg01-130F21.TJ (MSMg01no130_f21.g1)
ACCAG338138AG338139
length1,169705
length of high quality
(start - end)
374 (470 - 843)335 (371 - 705)
definitionCHROMAT_FILE: MSMg01no130_f21.b1 PHD_FILE: MSMg01no130_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:07 2005CHROMAT_FILE: MSMg01no130_f21.g1 PHD_FILE: MSMg01no130_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCACTCTNNNNNATTCAGTGGGCGCTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCAAAGAGGATGAATTCCCCTTAAGCTTCCAGTTATTTCTA
GTGAATCAGCTCTTTATCTTTCTTCATGCAACTACAGAGACATTCATTAA
ATATGTATTCATCTTGTTATTGAAGATAAGGCCTTAAAATATCTATTGTA
ATCTGAATTTATAAAATTTCTTGATAATACGAAGAGAAGTAATTCTCAAT
TAAGTTAATATTACTGTAATGTGGGGAGCAGGTGTGGCGGCAGTCCCAAA
GGCGCCAGGGACTGCAGCTAAGTCATATGACTTGCACCTGACTTCCTCAT
ATAAGACACAAACATCTTGAGTGCTGCGCAGGTGTACCAGGATACAGGTG
AATCCTATTTGGTGGAGATTTGCTCCTGCTGCCCTGATTAGCTGAAGCCT
TGTGACTGGCGAGCCCCCGTGGCCTGCGGTGCGTGGATGAGAGAGAGTAT
AAAAGGAGTGAGAGGCCCAGGGTTCGTGGGAGATATAAACAAGAAGAATC
AGGACTGAATAAACTGCTGTTAGAAGGACTGGTGGTCGCATCGTTCTTGC
TGGTCGAGAGCGGGCGCGACACTGTAAGTTATCTGCCAGAGAAGACTACT
CAAACATGGGTTGAAGGCATTTGAAAGTCTTTGTTAGCTGGCCAGCTTTG
ACTCTGGTTGTTTGGGACCGCAGAATACTCCCATAACTTTCTCAGGATTA
GCTTTCAAGCACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACTATCTAGAAGCTATAAAACACAGTTAGTACATTT
AGGAACTGTCCAGAATTATGGACTTTAACTAATTAGGTCTTTGATCTCAT
TTTGGCAGGTATTGCTGCCCCCATGCTGTGGTCCAGAATCCTGAATGATA
TTTCGATCATGGCATCAGGAATGCTAAAGACATGGGCCTGTGGAACTGTG
AAAAGTAAAATATTTTTGTTTTAATTGGGCCTTGTTTTTGTGAACCCCCT
AAAAAAATTCTTCCGGGGGAAAAAAAAAGTAACCCTTGTTTCCCAAAAAA
AAGTGGCTTTTACTTCCCAAAAACCCCCCACTCCCAAAATTTGGGGAATA
TAAACTCCTGCGAAAAAAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTGATCTAAACAGTCTGCCCTTTCCCTTA
ATGTTGAGTAATCACGTTCCTTGTTCTTTGCATGTGTTTTAATTTTGCTT
TTGGAGAGAAGCTTCCACAAAGAGCAGGCTGGCCTCCCATTCCTCATATA
ACTGAGAATCACCTTGAGTTCCTGATCTCCCTGATTCCCAGTTTGCTGTA
TTGGGATCATCCCTATGCCTTGCCAGGGATGCTGTGTGCTCTCCAATTAC
CTAATTTTTCATTTGCCTATATATAGTTTTGTTCACGTGGTTTCCAAATG
TAAATAATCTTGCACGGCTTTGTCTATAATTAATTTGTGTGGGAAGTAAA
TTGGGGCAAGAATTTTTTCTTATTATTATATTACATATATAGTTCACGTC
CTATTGTTCCAAATTTAGTGAGAGCTTAAACATACTAGGGCATTCTGACA
TTAAACCTTCGTCCCTGTATTATAAATTCTCTAATGCTTTACATTGAATT
TCCCCCAAATCATAATCAGATGCAATGACTCATGTTCTTATGTGGGGGTA
TTAATGTTCCACAGTGACTATTAGTGAGACAACAAGGAGGAGAAACCATA
ACAACAGTCGTGATCAAAGCCAGTACAGTGGGCAGGGAACCTGGATTCAG
AAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_f21.g1 MSMg01no130_f21.g1 CHROMAT_FILE:
MSMg01no130_f21.g1 PHD_FILE: MSMg01no130_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:07 2005
         (335 letters)



>mm_chr1_26576489_26577223
          Length = 735

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/335 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctataattaatttgtgtgggaagtaaattggggcaagaattttttcttattattata 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tgtctataattaatttgtgtgggaagtaaattggggtaagaattttttcttattattata 260

                                                                       
Query: 61  ttacatatatagttcacgtcctattgttccaaatttagtgagagcttaaacatactaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacatatatagttcacgtcctattgttccaaatttagtgagagcttaaacatactaggg 320

                                                                       
Query: 121 cattctgacattaaaccttcgtccctgtattataaattctctaatgctttacattgaatt 180
           ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cattctgacattaaacctttgtccctgcattataaattctctaatgctttacattgaatt 380

                                                                       
Query: 181 tcccccaaatcataatcagatgcaatgactcatgttcttatgtgggggtattaatgttcc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tcccccaaatcataatcagatgcaatgactcatgttcttatgtaggggtattaatgttcc 440

                                                                       
Query: 241 acagtgactattagtgagacaacaaggaggagaaaccataacaacagtcgtgatcaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtgactattagtgagacaacaaggaggagaaaccataacaacagtcgtgatcaaagc 500

                                              
Query: 301 cagtacagtgggcagggaacctggattcagaaaat 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtacagtgggcagggaacctggattcagaaaat 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)