Query= MSMg01no130_h14.b1 MSMg01no130_h14.b1 CHROMAT_FILE:
MSMg01no130_h14.b1 PHD_FILE: MSMg01no130_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:17 2005
(674 letters)
>mm_chr1_183149544_183150617
Length = 1074
Score = 1220 bits (631), Expect = 0.0
Identities = 661/671 (98%)
Strand = Plus / Minus
Query: 4 ggaattccttccagttccccaggaggacctcagctctgagagcttcttgcttacagggaa 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggaattccttccagtttctcaggaggacctcagctctgagagcttcttgcttacagggaa 628
Query: 64 agaaaattccttcctgctcacatctgtcactttctggtgtagtgtcctggttggttaagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 627 agaaaattccttcctgctcacatctgtcactttctggtgtagtgtcctggtaggttaagc 568
Query: 124 ctacaggtcacatctggctttatgtataatttctaccaggcagaatatctgcattccaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctacaggtcacatctggctttatgtataatttctaccaggcagaatatctgcattccaac 508
Query: 184 caggacctcttggagaagtgagctgcatcctcaaaaaggcactgaaggtaccccctgtgg 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caggaccccttggagaagtgagctgcatcctcaaaaaggcactgaaggtaccccctgtgg 448
Query: 244 cagcttttgtaggaagaaaaacctttcagtgtccctcagcggtaccctgatttactatca 303
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 447 cagcttttataggaagaaaaacctttcagtgtccctcagtggtaccctgatttactatca 388
Query: 304 accagtctggtgaaatgggacaggcatcaaaggcgaaagaccaagacttcatatacacaa 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 387 accagtctggtgaaatgggacaggcatcaaaggcgaaagaccaaggcttcatatacacaa 328
Query: 364 agacaaccatgcacaaaaatcaatttataggacttacactatttgttcttttaacctcga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agacaaccatgcacaaaaatcaatttataggacttacactatttgttcttttaacctcga 268
Query: 424 aggaattaaacaatggcttcctttcatagtctaccaacagctatctctgaaaagtagcac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aggaattaaacaatggcttcctttcatagtctaccaacagctatctctgaaaagtagcac 208
Query: 484 attgtagggttgagtacccagctcagccacacacaaactgtgtgacctcagattgtctgg 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 207 attgtagggttgagtacccagcttagccacacacaaactgtgtgacctcagattgtctgg 148
Query: 544 gcttcagtttttcacctgtcaggtggggctaactgtatcccacgaggaagagtgaaatca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcttcagtttttcacctgtcaggtggggctaactgtatcccacgaggaagagtgaaatca 88
Query: 604 gacaacgcatgtgtgccacacttagaacagtgcctggccagcagtgtcagctcttagtct 663
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 87 gacaacgcatgtgtgccatacttagaacagtgcctggccagtagtgtcagctcttagtct 28
Query: 664 tacttaaggat 674
|||||||||||
Sbjct: 27 tacttaaggat 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_h14.g1 MSMg01no130_h14.g1 CHROMAT_FILE:
MSMg01no130_h14.g1 PHD_FILE: MSMg01no130_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:17 2005
(558 letters)
>mm_chr1_183046036_183046994
Length = 959
Score = 1007 bits (521), Expect = 0.0
Identities = 549/561 (97%), Gaps = 6/561 (1%)
Strand = Plus / Plus
Query: 1 ttaatagataggtatttattaataagaaactagctaagctgggcatgctggcatacacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttaatagataggtatttattaataagaaactagctaagctgggcatgctggcatacacct 255
Query: 61 ttaatcccagcacttgggaggcagaggcaggcaaatttctgagttcgaggccagcctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttaatcccagcacttgggaggcagaggcaggcaaatttctgagttcgaggccagcctggt 315
Query: 121 ttacaaagtgagttccaggacagccagagctacacagagaaaccctgtcttgaaaaacaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 316 ttacaaagtgagttccaggacagccagagctacacagagaaaccctgtctcgaaaaacaa 375
Query: 181 aac-aaacaaacaaacaaacaaaaaaccaaaacaaaacaaaa-----aaaagaaaaagaa 234
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 376 aacaaaacaaacaaacaaacaaaaaaccaaaacaaaacaaaaaaaagaaaagaaaaagaa 435
Query: 235 aaaagaaactagccaaacctggattaatgcaagccccatgtttaagctcagttcatatga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaaagaaactagccaaacctggattaatgcaagccccatgtttaagctcagttcatatga 495
Query: 295 aagttaaattgaataaaataattttaaaacacagcaactctagggctagagaattggttc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagttaaattgaataaaataattttaaaacacagcaactctagggctagagaattggttc 555
Query: 355 agtgtttgagagttcttagtgctctcacggaggacctggaattgattcccagcacccaca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agtgtttgagagttcttagtgctctcacggaggacctggaattgattcccagcacccaca 615
Query: 415 agtaactgtaagtcccaaccatctgtaactccagtcccaggagaccagaagctgtcttct 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agtaactgtaagtcccaaccatctgtaactccagtcccaggagaccagaagctgtcttct 675
Query: 475 gacttccaggggcaatagaagcatatgcttgaacatacacacacacacacacacacacac 534
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 676 gacttccaggggcaatagaagcatatgcttgaacacacacacacacacacacacacacaa 735
Query: 535 acacacacacacacacacaca 555
| | | |||||||||||||||
Sbjct: 736 atatatacacacacacacaca 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
