BAC Information

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BAC

Clone NameMSMg01-130K17
Chromosome1 (Build37)
Map Location 172,694,817 - 172,695,049
singlet/doubletsinglet
Overlap geneAtf6
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130K17.T7 (MSMg01no130_k17.b1)MSMg01-130K17.TJ (MSMg01no130_k17.g1)
ACCAG338363AG338364
length725700
length of high quality
(start - end)
---233 (126 - 358)
definitionCHROMAT_FILE: MSMg01no130_k17.b1 PHD_FILE: MSMg01no130_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:34 2005CHROMAT_FILE: MSMg01no130_k17.g1 PHD_FILE: MSMg01no130_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAAATTTGCGGCGCCAGNGAGGNNNNATTTCCACCCGCCNGAANGGG
NNNNATTGCTGNACCGCGACGGNGGGANNANANNGNAGNGGANCANCGGA
GCCGGGCCCCGGAGCCGAGAGGNGCAACCCCAGGGGCANCACGGCCCAAG
GNGAGCAACCGAGGCAGCGGNGCCGCGGCAGAACNGGGCGAGAAGGAACA
GAGAGACCAGCACCACCAAGACCNANGGCCNCAGATTTTTTCAGACCCAG
AGCCTGCATTGCCTTTTCTAGCCCCTGCCTAGAAGGGACAGAAGCAGGAT
TTTTATTAAATTTGGCCCCGAACGGAGGCGGAACAGCGAGCAGATTTTCC
CCCCCCCCGCACCCCAACCAACAACAACGGAAGCACCCCAAGCAGGAGAC
GCCCCCCCCGGGAAAAAAAAACCAAACCAAAGACACAAAGCCAACCCACA
ANCCCGAACCCCCCACCAAAAACCCCACCCCCCAAAAGCCACCACACCAA
ACACCCCCAAGACACAGCAGAAGCCACACGAACAGGCACCCACCACCACC
CCACAAAACGGCCCCCGACCCNAACGGACCAACGGCAACCGACCCCCCAC
AGGGCCCCCCCACGGGCCCCAAACACACCCCCCACCCCGGAGCAAACACC
CCACACNACACCCCCCGCCCCCCACCGGACAACCCGGGAGCACAAAGGCC
CTTTTTTTTTTTTTTCTCCCGGCCN
CTCGATGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCACAAAAACATTCATGTAACTTAATTTCTTCTACT
GCTGGAGAGCACTAAAGTGTAGCCCAAACCCCAGTCTGATCTGGAAGATA
GTCCATTTTGGGACTTGGCTTTGTGATGAATGAGTGGTGGGGTGCTGTAG
AATTTCTTCCTATAAATAATAAGGGCAAAACCACCTTTTTATGTCTCTGA
AATATAAAGTGGAAACTCTATCAAGAAACTGCAAAATAAACTTTACAAGC
AGTATCACTTGAGGCAAATATTATTTTCTATATGCCATTGCTGCAAAAGT
TTATGGAATATTATATTATTTCCCACCCCCACATGGNCAAATTGTGAGAG
GAATTTAATTCTCCTGACCGCAGACTAAAAAAATGATCATGAACTCATTC
GAGGTTTTCACTGATAAGAAACAATAGCACTTGACATTCTCCACACTAAA
GACACTATATGAGCTTACTGCTGAAATATTGTATGTTTTAATGACAAACT
TCCGCTATTGAGTTGAAGATTTCTCAAAAAGGGCACAAATAAAAATAACC
CCTATACACTTACTTCACCTAACCCACAAACGAATAACCATTCAATATTG
AAGATTGTCTCATTTAGGGTTTCATTGGCACCAAGAAGAACCTTTTTTAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_k17.g1 MSMg01no130_k17.g1 CHROMAT_FILE:
MSMg01no130_k17.g1 PHD_FILE: MSMg01no130_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:34 2005
         (233 letters)



>mm_chr1_172694617_172695249
          Length = 633

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccccagtctgatctggaagatagtccattttgggacttggctttgtgatgaatgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccccagtctgatctggaagatagtccattttgggacttggctttgtgatgaatgagt 260

                                                                       
Query: 61  ggtggggtgctgtagaatttcttcctataaataataagggcaaaaccacctttttatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggggtgctgtagaatttcttcctataaataataagggcaaaaccacctttttatgtc 320

                                                                       
Query: 121 tctgaaatataaagtggaaactctatcaagaaactgcaaaataaactttacaagcagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaaatataaagtggaaactctatcaagaaactgcaaaataaactttacaagcagtat 380

                                                                
Query: 181 cacttgaggcaaatattattttctatatgccattgctgcaaaagtttatggaa 233
           |||||||||||||||||| |||| ||||||||||| || ||||||||||||||
Sbjct: 381 cacttgaggcaaatattactttcaatatgccattgttgtaaaagtttatggaa 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)