Query= MSMg01no130_m18.b1 MSMg01no130_m18.b1 CHROMAT_FILE:
MSMg01no130_m18.b1 PHD_FILE: MSMg01no130_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:46 2005
(291 letters)
>mm_chr1_134179667_134180358
Length = 692
Score = 511 bits (264), Expect = e-149
Identities = 285/294 (96%), Gaps = 5/294 (1%)
Strand = Plus / Minus
Query: 1 actgcatggggaggacatgctgtcacaagctgtgttgatttcacaagcaatggaccccct 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 492 actgcacggggaggacatgctgtcacaagctgtgttgatttcacaagcaatggacctcct 433
Query: 61 acgtagactcagttatcctcagtgtttcttggggcttgaacactggcctgtcagctgcag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcgtagactcagttatcctcagtgtttcttggggcttgaacactggcctgtcagctgcag 373
Query: 121 gggaaatggctctgtaattgaattgcctgtattggcttagctctaacatcataagaacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gggaaatggctctgtaattgaattgcctgtattggcttagctctaacatcataagaacgg 313
Query: 181 agtacaagaccatgacctgcaggctagttgccccttgtcccacaagactctccatcaccc 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtacaagaccgtgacctgcaggctagttgccccttgtcccacaagactctccatcaccc 253
Query: 241 ctgtatccacg---actttatccctttgtctcccagccttcctgctgagctatg 291
||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgtatccacgaccac--tatccctttgtctcccagccttcctgctgagctatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space: 192606
Effective search space used: 192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_m18.g1 MSMg01no130_m18.g1 CHROMAT_FILE:
MSMg01no130_m18.g1 PHD_FILE: MSMg01no130_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:46 2005
(329 letters)
>mm_chr1_134032074_134032802
Length = 729
Score = 588 bits (304), Expect = e-172
Identities = 321/331 (96%), Gaps = 8/331 (2%)
Strand = Plus / Plus
Query: 1 ctgccgncagaaaagactccatgcaccatcggccctccatgatgacatcaggtaaggcaa 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccgtcagaaaagactccatgcaccatcggccctccatgatgacatcaggtaaggcaa 260
Query: 61 gaagctaaggcctatgggagacatgacctcactgcaatcctcaaaaccacatgaaccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagctaaggcctatgggagacatgacctcactgcaatcctcaaaaccacatgaaccatt 320
Query: 121 ttaaatttgggaagttggagcttgcgggggagcaaattgctgacccaaaggcaaccagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaatttgggaagttggagcttgcgggggagcaaattgctgacccaaaggcaaccagct 380
Query: 181 attgagtggcaggggcagggttatactcactgagcctcggcccccaccagcggctggcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgagtggcaggggcagggttatactcactgagcctcggcccccaccagcggctggcag 440
Query: 241 gagacatgcgcttgtaaatagtgaacaagaaaagtttttct----gccatttggggccat 296
||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 441 gagacatgcgcttgtaaatagtgaacaagaaaagt----caaccagccatttggggccat 496
Query: 297 tcttcccactttgcctgttcccaaggaacac 327
|||||||||||||||||||||||||||||||
Sbjct: 497 tcttcccactttgcctgttcccaaggaacac 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
