Query= MSMg01no131_h20.b1 MSMg01no131_h20.b1 CHROMAT_FILE:
MSMg01no131_h20.b1 PHD_FILE: MSMg01no131_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:44 2005
(505 letters)
>mm_chr1_37571827_37572731
Length = 905
Score = 764 bits (395), Expect = 0.0
Identities = 457/487 (93%), Gaps = 18/487 (3%)
Strand = Plus / Minus
Query: 35 attgttatct--tgccctagattttatgtgtatgatgataactatgaaactcacttttgg 92
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 attgttatctcat--cctagattttatgtgtatgatgataactatgaaactcacttttgg 848
Query: 93 ttttactggtatttctgtatggattaagttgagaagaactaataccctgaaatatctgaa 152
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 847 ttttactggtatttctgtatggattaagttgggaagagctaataccctgaaatatctgaa 788
Query: 153 tatttgtgcctttgtttcagaataatcatgaagtttttccatatatacattgttaggttt 212
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tatttgtgtctttgtttcagaataatcatgaagtttttccatatatacattgttaggttt 728
Query: 213 gtatctg-------------g-gtgtgtgtgtgtgtgtgcatgcacttttatacatgtgc 258
||||||| | |||||||||||||||||||||||| | | | | |||||
Sbjct: 727 gtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcacatgtgtgcgtgtgc 668
Query: 259 tctctaagataataccattttttaaaaattctggctgctcattgctgcaatataggaaac 318
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 667 tctctaagataataccattttttaaaaattctggttgttcattgctgcaatacaggaaac 608
Query: 319 caattgccccagccatacccctcccacacatgtctgtatagctcatttatatagttacct 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caattgccccagccatacccctcccacacatgtctgtatagctcatttatatagttacct 548
Query: 379 ctacccagcagctttgttcaaattatattttagtcccagaagatcttgtggctgtttctt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctacccagcagctttgttcaaattatattttagtcccagaagatcttgtggctgtttctt 488
Query: 439 ccttcgacatctgtatagcctttctttgtcttgtcttgttgccctcgtgaggcctctagt 498
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccttcgacatctgtgtagcctttctttgtcttgtcttgttgccctcgtgaggcctctagt 428
Query: 499 gcagcat 505
|||||||
Sbjct: 427 gcagcat 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_h20.g1 MSMg01no131_h20.g1 CHROMAT_FILE:
MSMg01no131_h20.g1 PHD_FILE: MSMg01no131_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:44 2005
(571 letters)
>mm_chr1_37450191_37451159
Length = 969
Score = 1019 bits (527), Expect = 0.0
Identities = 560/573 (97%), Gaps = 6/573 (1%)
Strand = Plus / Plus
Query: 1 cattgtgctgac-tacagttctctatcctcaatgaggacatagtctgagagggttctggc 59
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgtgctgacacacagttctctgtcctcaatgaggacatagtctgagagggttctggc 260
Query: 60 agccacagcactggagaagaaccccaaagtggctcagcagagcttttagctgctcaggtc 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccacagcactggaggagaaccccaaagtggctcagcagagcttttagctgctcaggtc 320
Query: 120 ttttgaattcatcccagtgaacttcccaagcctctgcctcttggggttccatatagagca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgaattcatcccagtgaacttcccaagcctctgcctcttggggttccatatagagca 380
Query: 180 tagacctgtccctgactggagagttttctcttatgtgagggtaggctccaaagaggaaca 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tagacctgtccctgactggagagttttctcttatgtgggggtaggctccaaagaggaaca 440
Query: 240 gtatatggactgtggagataagcagcctgtcctgcgttctcctaaaggtgagtgagatgg 299
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gtatatggactggggagataagcagcctgtcctgcgttctcctaaaggtgag----atgg 496
Query: 300 acctagacttgagagccaatgatgaaacagtgcagagaacacttgcaagtcactgatggg 359
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 497 acctagacttgagagccaatgattcaacagtgcagagaacacttgcaagtcactgatggg 556
Query: 360 gagtacaaaggcaaataccctgcactgtccctgt-cactgtgaatcatgagacatcagta 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 557 gagtacaaaggcaaataccctgcactgtccctgttcactgtgaatcatgagacatcagta 616
Query: 419 ttactgtgtgtgtccagggaatggaagggttgcctggctgtggaccctgtgtgtgtatgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttactgtgtgtgtccagggaatggaagggttgcctggctgtggaccctgtgtgtgtatgg 676
Query: 479 ttaagaaggacccaggagagggcactggcatctatttgtcagtgcttatttgggaaaagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttaagaaggacccaggagagggcactggcatctatttgtcagtgcttatttgggaaaagg 736
Query: 539 ctgcctctgcttggccccttgggtatgctggtt 571
|||||||||||||||||||||||||||||||||
Sbjct: 737 ctgcctctgcttggccccttgggtatgctggtt 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 969
Length adjustment: 10
Effective length of query: 561
Effective length of database: 959
Effective search space: 537999
Effective search space used: 537999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
