BAC Information

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BAC

Clone NameMSMg01-131I04
Chromosome1 (Build37)
Map Location 170,402,619 - 170,402,802
singlet/doubletsinglet
Overlap genenone
Upstream geneRxrg, Lmx1a, LOC100039879, Pbx1
Downstream geneEG383613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131I04.T7 (MSMg01no131_i04.b1)MSMg01-131I04.TJ (MSMg01no131_i04.g1)
ACCAG338995AG338996
length701871
length of high quality
(start - end)
184 (124 - 307)50 (76 - 125)
definitionCHROMAT_FILE: MSMg01no131_i04.b1 PHD_FILE: MSMg01no131_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:45 2005CHROMAT_FILE: MSMg01no131_i04.g1 PHD_FILE: MSMg01no131_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXATTACGTAGTGACGGCG
GAATCAGAGATTGCTGATTGAGGGAAGATTCAAGACTTATTAAATGTTGG
TTTTAAATTCAGTTGGACCCACTGAAGTTTATATGTCTTATAAAGCATGA
TTGTGGAATTCAGAGATTTCTTGTTTGCAAAAAGGATTCAAAGATGAATT
ACTTGAATTTATTAAAACGTTAGGTTCAGAATCCATTGGCTTTGCCTGTG
TAAAGGGTCCATTTGCTTCTCTGATTGAATTATTTTATCTCGATTATGAA
ACAGGGTGTGGTTTTAAGTANTTTAGCTGGGGTGAGCAGNCTGAAAACAG
CCCATTTGTTCTTGACCCCCACCTTTAGGTGAAAGAGCAGAACATTTCAA
TTGTGGACAAAGATCCTGCTGAGGCTATCAGGACCGAGAGGGAAACGGGA
GACCTTGTTTCTGAGGTCAGGCAGGAGATGCTGGGTACCTCAGTCATGTG
AAGGGCATGATGATGTTGTGGTTCAACATGGGACTGGAAAAAGAGGGGTT
AAAAAAGTTAATATTCAGCAATTAAAGAACCAATTACCCAAAGGAAAAAC
TGGACATTAACCAAAGAAGACAAAATTCCACTGTGAGGCAATCCAGAGGA
AGGATAGATTTAATAAGCCTCAGGGATTAATAAGTCTCATAATTTGTACT
G
TCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCGCAATCCAGGGCCAAGAAGTGGGAAGGGGGGAG
GTAGGGAAGTGGGCGGGGCAAGGCACGGGGGACTTTAGGGATAGCATTGG
ACACGCCCTAGTCTACTCACCAATATGCGTTTCTATTATTTATATTAACC
GAACCAATACCGATGGCCTAGGATAGAAAATGATATCCGGGTTAGTCATA
TAAGATTGACAAAAACTAAATAATTAACTATAATAAGAAATATAAAAATT
AGTATCAAAATAAGAACTAAAGAGAAAAACAACTAATTTTGTTATATGTT
TAACATAGATGAGTTAGTTGTCAAACATTTTTTTATTATATACCCATATG
TAAGATCTTAGGTAAAATGAAATAATATAAATAAAATAATTTTTAACCAA
TATTAATCAATTATTATAAATTTTACAATATAATTATTATATAAATATAA
TAAATAAAATAAATATTATTATTCATAAAAATATTTAATTATATTTTCTT
AACTACCTATAATATACATCTTTCTATTTATTCTATCTCATACACCTCAC
CTTCTTTTCTTTTTATCTCTCACCCCACACATCGTACACTCTCCCCACTC
TTATTTTATCCTCGCTTACTACCAACGCCGCTCATCAAATAACATCAGAC
ATACAAACACACACTAAAATAGAAGCACACCAATAACTATACTATAATAA
TAACCTGTCTTCTTTATTTTATTCACATCTACATAACGACATATCACGTT
GTATTATATATTGTAAAATTATAATATATTATAACCATAACCTAATAATA
ATAAATAATCTAATAAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_i04.b1 MSMg01no131_i04.b1 CHROMAT_FILE:
MSMg01no131_i04.b1 PHD_FILE: MSMg01no131_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:45 2005
         (184 letters)



>mm_chr1_170402419_170403002
          Length = 584

 Score =  348 bits (180), Expect = e-100
 Identities = 183/184 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagtttatatgtcttataaagcatgattgtggaattcagagatttcttgtttgcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtttatatgtcttataaagcatgattgtggaattcagagatttcttgtttgcaaaaa 260

                                                                       
Query: 61  ggattcaaagatgaattacttgaatttattaaaacgttaggttcagaatccattggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattcaaagatgaattacttgaatttattaaaacgttaggttcagaatccattggcttt 320

                                                                       
Query: 121 gcctgtgtaaagggtccatttgcttctctgattgaattattttatctcgattatgaaaca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgtggaaagggtccatttgcttctctgattgaattattttatctcgattatgaaaca 380

               
Query: 181 gggt 184
           ||||
Sbjct: 381 gggt 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)