BAC Information

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BAC

Clone NameMSMg01-131M17
Chromosome1 (Build37)1 (Build37)
Map Location 87,483,190 - 87,483,78185,261,936 - 85,262,122
singlet/doubletsingletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131M17.T7 (MSMg01no131_m17.b1)MSMg01-131M17.TJ (MSMg01no131_m17.g1)
ACCAG339203AG339204
length713715
length of high quality
(start - end)
592 (120 - 711)189 (128 - 316)
definitionCHROMAT_FILE: MSMg01no131_m17.b1 PHD_FILE: MSMg01no131_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:08 2005CHROMAT_FILE: MSMg01no131_m17.g1 PHD_FILE: MSMg01no131_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:08 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(87,483,190 - 87,483,781)(85,261,936 - 85,262,122)
sequence
ATCTATAATTGCGGCGCTAATACGATCACTTTCAAAGAGGATCCGCGGAA
TTCTTTGATTCGAACATGGGAATTACGCTAGGAAACAGATAATGGTAGAG
CCTAAGGATGATTTCCGCGCATGAGAAACCAAGAATTTGTGAAGGGAAAA
CAAGAACCAGACATGAGGAGATAAAGACTTGAGCAGCTGGAGTATTGGAT
CGTTTGCCTGCTATCCCAGCACTTGAAAGCATCCAGGATCATGGAAAGAA
CTGAAGTGGGAGAAAACGGACTTGGAAGGCTTCCAGGAAGCAATGGGGAA
ACCAATGAATGACAGTATCAGAAAGGTCACAGTGTTTTTATCATTATTAT
CATTATCATAATTATGACATTTATCAGTATGTGGAGGTTGGGCATATGTT
CCATGGTACACATGGAGAGGCCAAGAAACAACTTGTGAGTTTGGTCTGTT
CTTCCACCATATGGGTTTCAGGGATCAAATTCAGGTCACCAGGCTTGGTG
GCAAGGACCTCGAGCTAGTGAGCCATTTGCCAGACCAATGACACATTTTA
ATTGACTGGTGACATCTCAGAGTAGAAGATGGGAGAGCGCCAAAGGCGAG
GTGGGAATAGGTAGTCAGGTGGACATCCAACCTGCTTGCCACCATGAGGT
TTAAGTGACAGATAATGGATGTTGCCTGCCTATGATTTACCAGGAAGCAT
TTTCCTTCTGGGG
ACGATGAACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCAAAAAAATTCCACAGACAGTGCAAGGGTAGCAAAGA
TTAATGCAGCCATCTTTATGCCTGTCAGATTGATAACCACAACAAAAATG
TCTTCAGAGACAGAAACTGCAAACACTCAGAGACAGATACCTCCACCTGC
TTATATGAAAGGCACTGAGCCAGTGATTAACCACCCTATTTACTCCCAAA
AGACACAGCACACTGCTGGTTATCACTAGTGGACTTGACCAAATGTCACA
GGAGAAATGGTGCTTATTATATCTGCAGGAGCAGATGTAGCCCTGACTGA
GTCCCTGTTTTTTTTATCACACACCTCCGTCTCATCTTTTCTATTTTTAT
TTTGAATTATGTATGCATGAAACAAACTCAATGTGATTCCTGCACGCAAA
TACAGTGTCCATGGAAGGCAGAGAAGGCTGTCTGACCTGGAGTTGGCATG
AGAGGCAGTTGGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCATGCCC
ACTACTAGGACAATATGAGTGCTTAAACCTGGGCCATCTCTCCTATCGTT
TGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGACTGAGAGAGACTGAGACTGACAGAGACCGATACTATTCTCAGACTGA
GAGACTGATCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_m17.b1 MSMg01no131_m17.b1 CHROMAT_FILE:
MSMg01no131_m17.b1 PHD_FILE: MSMg01no131_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:08 2005
         (592 letters)



>mm_chr1_87482990_87483981
          Length = 992

 Score = 1091 bits (564), Expect = 0.0
 Identities = 585/592 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagact 260

                                                                       
Query: 61  tgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggac 320

                                                                       
Query: 121 catggaaagaactgaagtgggagaaaacggacttggaaggcttccaggaagcaatgggga 180
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggaaagaaccgaggtgggagaaaacggacttggaaggcttccaggaagcaatgggga 380

                                                                       
Query: 181 aaccaatgaatgacagtatcagaaaggtcacagtgtttttatcattattatcattatcat 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccaatggatgacagtatcagaaaggtcacagtgtttttatcattattatcattatcat 440

                                                                       
Query: 241 aattatgacatttatcagtatgtggaggttgggcatatgttccatggtacacatggagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattatgacatttatcagtatgtggaggttgggcatatgttccatggtacacatggagag 500

                                                                       
Query: 301 gccaagaaacaacttgtgagtttggtctgttcttccaccatatgggtttcagggatcaaa 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaagaaacaacttgtgagttgggtctgttcttccaccatatgggtttcagggatcaaa 560

                                                                       
Query: 361 ttcaggtcaccaggcttggtggcaaggacctcgagctagtgagccatttgccagaccaat 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaggtcaccaggcttggtggcaaggacctcgagctagtgagccatttgccagaccaat 620

                                                                       
Query: 421 gacacattttaattgactggtgacatctcagagtagaagatgggagagcgccaaaggcga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacacattttaattgactggtgacatctcagagtagaagatgggagagcgccaaaggcga 680

                                                                       
Query: 481 ggtgggaataggtagtcaggtggacatccaacctgcttgccaccatgaggtttaagtgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgggaataggtagtcaggtggacatccaacctgcttgccaccatgaggtttaagtgac 740

                                                               
Query: 541 agataatggatgttgcctgcctatgatttaccaggaagcattttccttctgg 592
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 agataatggatgttgcctgcctatgatttaccaggaagcattttcattctgg 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no131_m17.g1 MSMg01no131_m17.g1 CHROMAT_FILE:
MSMg01no131_m17.g1 PHD_FILE: MSMg01no131_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:08 2005
         (189 letters)



>mm_chr1_85261736_85262323
          Length = 588

 Score =  325 bits (168), Expect = 1e-93
 Identities = 183/188 (97%), Gaps = 1/188 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgataaccacaacaaaaatgtcttcagagacagaaactgcaaacactcagagacaga 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gattgataaccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacaga 260

                                                                       
Query: 61  tacctccacctgcttatatgaaaggcactgagccagtgattaaccaccctatttactccc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 261 tacctccacctacttatatgaaaggcactgagccagtgattaaccacgctatttattccc 320

                                                                       
Query: 121 aaaagacacagcacactgctggttatcactagtggacttgaccaaatgtcacaggagaaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagacacagcacactgctggt-atcactagtggacttgaccaaatgtcacaggagaaa 379

                   
Query: 181 tggtgctt 188
           ||||||||
Sbjct: 380 tggtgctt 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space:   104980
Effective search space used:   104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)