BAC Information

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BAC

Clone NameMSMg01-133A20
Chromosome1 (Build37)
Map Location 153,994,370 - 154,140,894
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
Downstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133A20.T7 (MSMg01no133_a20.b1)MSMg01-133A20.TJ (MSMg01no133_a20.g1)
ACCAG340131AG340132
length697719
length of high quality
(start - end)
239 (123 - 361)533 (68 - 600)
definitionCHROMAT_FILE: MSMg01no133_a20.b1 PHD_FILE: MSMg01no133_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:45 2005CHROMAT_FILE: MSMg01no133_a20.g1 PHD_FILE: MSMg01no133_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,994,370 - 153,994,608)(154,140,362 - 154,140,894)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAATATTTTCACAATATCTTCATGTTTTCTAAGTAAGAATCATTGTTT
TCCTAATCTAAAATTTAACCCCAAAAAAACCAAAACAAAACAAAAACCAC
TATAGGTGGATCTCTATGTGCTCTGTGTGCACTGTGTGAGGCCCATCAGA
GTGTTCTTCAAGAGACCAATGGGACTTTGAAAATCAGAAGATCTTATTGT
TGTTTGAGAAAGCTTCTTTTCTATTCTGAGATATATAGTCTCTCTCTCTC
TTCCTTGTCTCCAACTCATTCTATTTTTCTTCAAGAAACATTGTCATATA
CAACTCATTTTATATATTACTCACATTTTTAAAAGATAAATGGAGGGACT
AGAGAGACAGCTCAGCAGTCAAGAGCACTGAATGCTCTTCCAGAGTACCT
AGGTTTGATTTACACGCACTCATACAAACACACACACACACACACACACA
AGGATAACAATCATTACTAACTATGGTCCCAAGGGATTTGACCTCCTCAG
GCACTGTAGTCACATTATACAGAGACATACATGCAAGAAAAATACCCCTA
CACATAAAATAAATGTGTCTCAAATTAAAAAAAAAAGATAAAGGGATATA
TTTAAGGTTGACTTTTATTTAGACAAGCTCATGAAAAGATTTTTAGA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCGAGGGAAAGAGCCTTCCGATAGATGGAGGA
GGTGAAAAGTTCCTTGGGGTCTGCTGGGATTGAGCTGCCTGCTTCCCTCT
ACCAAGACAGGTCCTCAGGTCAGGCTAAGGACTCCCCGGCTCAACGGTTC
ATTTGTTTTCCCTCCTCTTGCCTTTGGGTTTTGCTATTCCCAAACGTTGT
AGGGTTTTGTTTTCCAGAGGTTCAACTATCTTCCCTTCCATGGTATTTAC
AGGCTCCTGTCCTGCCAGGAAAGGGTCCTCCTGTTACTGGTGTTCAGGGG
CACCGAGCAGGGTCAGCACCCAAGGGCTGGTCTTGTGTTCTACGCCCACT
TAGTTGGGTGAGATGTCATGGGGTACACTTGTGACTCCATCCTCAATGTC
CGAGAAGTTGCAAGTGTTTCAGTAACGATGCTTTTTTCAAAGCTGTGACA
TCTTTCCAAATATTGTCTGAGGTGAGAAGCAAGGGAGGAATGCACATGAC
CTTGTGCATGCTCCATCTATGCCAGACTGTACTAAGTTCCTAAAGTACAT
CAGCTCTCAGCAATCCAGCGAGCTTGCTATTGACCAAGATTCAACTGTGG
TTTACCTGGATGGTATGGAAGTGAAGGGTCAGGTTTCACTCAAGTTTCCA
GGTCCTAGTGGCCACATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_a20.b1 MSMg01no133_a20.b1 CHROMAT_FILE:
MSMg01no133_a20.b1 PHD_FILE: MSMg01no133_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:45 2005
         (239 letters)



>mm_chr1_153994170_153994808
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaccaaaacaaaacaaaaaccactataggtggatctctatgtgctctgtgtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaccaaaacaaaacaaaaaccactataggtggatctctatgtgctctgtgtgcac 260

                                                                       
Query: 61  tgtgtgaggcccatcagagtgttcttcaagagaccaatgggactttgaaaatcagaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtgaggcccatcagagtgttcttcaagagaccaatgggactttgaaaatcagaagat 320

                                                                       
Query: 121 cttattgttgtttgagaaagcttcttttctattctgagatatatagtctctctctctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttattgttgtttgagaaagcttcttttctattctgagatatatagtctctctctctctt 380

                                                                      
Query: 181 ccttgtctccaactcattctatttttcttcaagaaacattgtcatatacaactcatttt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgtctccaactcattctatttttcttcaagaaacattgtcatatacaactcatttt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no133_a20.g1 MSMg01no133_a20.g1 CHROMAT_FILE:
MSMg01no133_a20.g1 PHD_FILE: MSMg01no133_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:45 2005
         (533 letters)



>mm_chr1_154140162_154141094
          Length = 933

 Score =  946 bits (489), Expect = 0.0
 Identities = 522/533 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgagggaaagagccttccgatagatggaggaggtgaaaagttccttggggtctgctgg 60
           ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 733 ctcgagggaaagagcctcccgatagatggaggaggtgagaagttccttggggtctgctgg 674

                                                                       
Query: 61  gattgagctgcctgcttccctctaccaagacaggtcctcaggtcaggctaaggactcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 673 gattgagctgcctgcttccctctaccaagacaggtcctcaggtcaggctaaggactcccg 614

                                                                       
Query: 121 ggctcaacggttcatttgttttccctcctcttgcctttgggttttgctattcccaaacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 613 ggctcaacggttcatttgttttccctcctcttgcctttgggttttgctattcccaaatga 554

                                                                       
Query: 181 tgtagggttttgttttccagaggttcaactatcttcccttccatggtatttacaggctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtagggttttgttttccagaggttcaactatcttcccttccatggtatttacaggctcc 494

                                                                       
Query: 241 tgtcctgccaggaaagggtcctcctgttactggtgttcaggggcaccgagcagggtcagc 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 tgtcctgccaggaaagggtcctcctgtttctggtgttcaggggcaccgagcagggtcagc 434

                                                                       
Query: 301 acccaagggctggtcttgtgttctacgcccacttagttgggtgagatgtcatggggtaca 360
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 433 acccaagggctggtcttgtgttctacacccacttagttgggtgagatgtcgtggggtaca 374

                                                                       
Query: 361 cttgtgactccatcctcaatgtccgagaagttgcaagtgtttcagtaacgatgctttttt 420
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 373 cttgtgactccatcctcaatgtccaagaagctgcaagtgtttcagtaacgatgctttttt 314

                                                                       
Query: 421 caaagctgtgacatctttccaaatattgtctgaggtgagaagcaagggaggaatgcacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaagctgtgacatctttccaaatattgtctgaggtgagaagcaagggaggaatgcacat 254

                                                                
Query: 481 gaccttgtgcatgctccatctatgccagactgtactaagttcctaaagtacat 533
           || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gatcttgtgcatgctccatctatgccagactgtactaagttcctaaagtacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)