Query= MSMg01no133_e16.b1 MSMg01no133_e16.b1 CHROMAT_FILE:
MSMg01no133_e16.b1 PHD_FILE: MSMg01no133_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:04 2005
(234 letters)
>mm_chr1_167047358_167047991
Length = 634
Score = 395 bits (204), Expect = e-114
Identities = 228/236 (96%), Gaps = 3/236 (1%)
Strand = Plus / Plus
Query: 1 gggactgtcctacagtttaaaggttatatcttaaagtagcatacaaattgggtacaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gggactgtcctacagtttaaaggttatatcttaaagtagcatacaaattggatacaatta 260
Query: 61 aagtctataaatgtaaggaagataatacagcaagatggaactcattctggatgtaagaga 120
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 261 aagtctataaatgtaaggaagataatatggtaagatggaactcattctggatgtaagaga 320
Query: 121 actgaaagcaa-attttttcttttctttt-tttaaactaggtattttcttcatttacatt 178
||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 321 actgaaagcaattttttttcttttcttttcttt-aactaggtattttcttcatttacatt 379
Query: 179 tcaaatgctatcccaaaagtcccccataccctccccctgccactcccctacccacc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaaatgctatcccaaaagtcccccataccctccccctgccactcccctacccacc 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no133_e16.g1 MSMg01no133_e16.g1 CHROMAT_FILE:
MSMg01no133_e16.g1 PHD_FILE: MSMg01no133_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:04 2005
(554 letters)
>mm_chr1_167208373_167209326
Length = 954
Score = 868 bits (449), Expect = 0.0
Identities = 488/505 (96%), Gaps = 7/505 (1%)
Strand = Plus / Minus
Query: 50 tacataaaactagtaaaagaaggacagtgacttatgctgtctggaccacacggaacatta 109
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 954 tacataaagctagtaaaagaagtacagtgacttatgctgtctggaccacacggaacatta 895
Query: 110 ctgccctattcttcatatgtgacctttaccctcaggcttggctgaaacatccccctcttc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ctgccctattcttcatatgtgacctttaccctcaggcttggctgaaacatccccctcttc 835
Query: 170 caagaagactttcaaactctctgtgtcacttttcttatatagaatgtctctggtgtcctg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 caagaagactttcaaactctctgtgtcacttttcttatatagaatgtctctggtgtcctg 775
Query: 230 caggcactgaagaagcaaagacaggcagatctctttgagttctaggccagtatgttatac 289
||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct: 774 caggcactgaagaagcagaggcaggcagatctctgtgagttctaggccagtatgttatac 715
Query: 290 atagcaagttccaagccaggcagagctacataatgagaccatgtctggaaaaagaaaaaa 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 714 atagcaagttccaagccaggcagagctacataatgagaccatgtctggaaaaagaaaaca 655
Query: 350 gaaccaccaacaacaaaacaaacaaaaataaacaaaactccccacatctctccatttacc 409
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 654 gaaccaacaacaacaaaacaaacaaaaacaaacaaaactccccacatctctccatttacc 595
Query: 410 tgtatttttctatttatttatcctttgtaaatataattttcttattgtttattttgtgct 469
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 594 tgtatttttctatttatttatcctttgtaaatataattttc-------ttattttgtgct 542
Query: 470 tgtgtgcacatgtgctgcggtcggttgtgaaggtcacaggacaagccagggaatacacct 529
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtgtgcacatgtgctgaggtcgattgtgaaggtcacaggacaagccagggaatacacct 482
Query: 530 ctctccttctaccatgtgtgtctaa 554
|||||||||||||||||||||||||
Sbjct: 481 ctctccttctaccatgtgtgtctaa 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
