BAC Information

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BAC

Clone NameMSMg01-133H20
Chromosome1 (Build37)
Map Location 169,538,874 - 169,539,176
singlet/doubletsinglet
Overlap geneRxrg
Upstream geneEG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52
Downstream geneLmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133H20.T7 (MSMg01no133_h20.b1)MSMg01-133H20.TJ (MSMg01no133_h20.g1)
ACCAG340454AG340455
length720709
length of high quality
(start - end)
292 (62 - 353)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no133_h20.b1 PHD_FILE: MSMg01no133_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:19 2005CHROMAT_FILE: MSMg01no133_h20.g1 PHD_FILE: MSMg01no133_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTAAGTCCACTACTTCTCTCTTCTCTTTCTCATAAGTATCTGTCTCTTC
TTCCTTTCTCCCTGCTCTCTATTTCTTTCCCTCCCTCCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTTTATACATGCACACACTTCATTGGCTGTTG
AGAGATCTCACAGATTTTGTGTTTGATAACAGAAGCACTGATTTCTTATT
CAAATAATTTCATTTATTAATTCTATATTCATATATATTCTATTTTTATA
TAACAGTATATGTTATTTTATATGATATATAATATATTGTATATATTAGT
TATGACTGACCTCCATATCCATNGCCCAGAAGTTTCAATGTTCAATAACT
AGCCAACAAGTCATATAAAAAAAAAATAAACCACGTGGGGTAGAATAGTA
TTTTCTAGCAGGGGTGCCCAACCTTCTGACATTGTGGCATGTCGTTGGGG
TCTACAGATATGTGGGATGACATCCACAGCTACTTCAAGATGCATATGGC
CTGCGCTGGCGGGACAAGCAAAGAGGTGACTGACTCCTGTTTACCATGAA
TCCTGAACACAAGCCATTAATGCTGGTCTGTGTCGCATGTAGAATTATGA
GAGGATAACAGGCGATGCATGGACGACAACAGGTCCCCTGTGCCGACAGA
ACATCATATTAAGCTTATTA
TCGATGCAGTGAGTAGCCTGGCGGACGCCTGGCTTTCTCATGGGGGTGAA
CTATAGAAGGTCTCCCGCAAAACAGGACAGTGGCGATGCCTAAGGCTGAA
TGATAGTGGCAAGTAACATTTCACCAACAACAATTTGTATACTCCTCACT
TTCACCCCATGAGGTTTGTTCTCATCCCCATTTTATAGAGGAGAAACTGA
GGCAAAAGGAATTCCCAACTAACCTTCTCACGATCGTCCAGCTAGTAAGT
AGTAGAGCTCAGCTTTGGAGCTGCGCTCTGAATCAGAGGTTCTGCACCAA
CCATGGTCTATGCTGGGTAGGGATGTTTGGGATGCAGTCATCTACTTGGG
CTTTGAATGGTAGACTACACACAAGAACTATCAAAAGTAGAATCAAGTAT
TGCTTATCCTACAAGCTGCTAAGTGCTTTGCTTTCTTTTTAAGAAGTGGG
TCAGAATGAGTGCGTCTATTGGCTACACTCGTTTAGGGTTGGGCCCCTGG
TTTCATGGCCGCCTTCCCTCGCAGACACACATTTTTCATTATTTAAGTCC
TGAGAACCACACAGACTAGTGCTAGAACCCTCGGATAGTGAACGAGGACT
ACAGGCCAATGTTCTATGACTCACTGCACAGAGGTAATGTAACTACGCGA
GAGGTACACAACGTATCGCTGGCTGCTGCTGCTTGCTAGTAGCTACCCTT
CACCTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_h20.b1 MSMg01no133_h20.b1 CHROMAT_FILE:
MSMg01no133_h20.b1 PHD_FILE: MSMg01no133_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:19 2005
         (292 letters)



>mm_chr1_169538685_169539376
          Length = 692

 Score =  497 bits (257), Expect = e-145
 Identities = 288/303 (95%), Gaps = 11/303 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacttctctcttctctttctc-ataagtatctgtctcttcttcctttctccctgctctct 59
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 190 tacttctctcttctctttctcaataagtatctgtctcttcttcctttctccctgttttct 249

                                                                       
Query: 60  atttctttcc-------ctccctc-ctctctctctctctctctctc--tctctctctctt 109
           ||||||||||       ||| ||| |||||||||||||||||||||  ||||||||||||
Sbjct: 250 atttctttcccttctctctctctctctctctctctctctctctctctttctctctctctt 309

                                                                       
Query: 110 ttatacatgcacacacttcattggctgttgagagatctcacagattttgtgtttgataac 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttatacatgcacacacttcattggctgttgagagatctcacagattttgtgtttgataac 369

                                                                       
Query: 170 agaagcactgatttcttattcaaataatttcatttattaattctatattcatatatattc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agaagcactgatttcttattcaaataatttcatttattaattctatattcatatatattc 429

                                                                       
Query: 230 tatttttatataacagtatatgttattttatatgatatataatatattgtatatattagt 289
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 430 tatttttatataacagtatatgttagtttatatgatatataatatattgtatatattagt 489

              
Query: 290 tat 292
           |||
Sbjct: 490 tat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)