Query= MSMg01no133_l20.b1 MSMg01no133_l20.b1 CHROMAT_FILE:
MSMg01no133_l20.b1 PHD_FILE: MSMg01no133_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:37 2005
(291 letters)
>mm_chr1_183403388_183404079
Length = 692
Score = 534 bits (276), Expect = e-156
Identities = 288/292 (98%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 1 gatcatcc-acagcagctgtcaactccagcaccattctggaaattaccaccttgacacac 59
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 492 gatcatccaacagcagctgtcaactccagcgccattctggaaattaccaccttgacagac 433
Query: 60 cttgaaatcctcctgcaacccagctcacagtgctgagcccatttgaatttatgaattatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cttgaaatcctcctgcaacccagctcacagtgctgagcccatttgaatttatgaattatt 373
Query: 120 tgcagagataatgaaagctatcagaatacttttcaactacatttgaaatgaaattaacca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgcagagataatgaaagctatcagaatacttttcaactacatttgaaatgaaattaacca 313
Query: 180 gcaagaagaccattaggcaaagattctcacatccttaaaatagcagactgacgccctttc 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcaagaacaccattaggcaaagattctcacatccttaaaatagcagactgacgccctttc 253
Query: 240 tcttacccaggtctccagttagactttcccttctcactggagtctcagaaag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcttacccaggtctccagttagactttcccttctcactggagtctcagaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space: 192606
Effective search space used: 192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no133_l20.g1 MSMg01no133_l20.g1 CHROMAT_FILE:
MSMg01no133_l20.g1 PHD_FILE: MSMg01no133_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:37 2005
(384 letters)
>mm_chr1_183291848_183292631
Length = 784
Score = 681 bits (352), Expect = 0.0
Identities = 376/384 (97%)
Strand = Plus / Plus
Query: 1 agccttacatttcctgagaagcctccactgcccctcatttatttcctctgtccccttaca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccttacatttcctgagaaacctccactgcccctcatttatttcctctgtccccttaca 260
Query: 61 ccccaaggttccactggtcttgcagcactaggctacaggttcttggggattggaatggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaaggttccactggtcttgcagcactaggctacaggttcttggggattggaatggct 320
Query: 121 cccatctgttgtggttatctcactatccagtgcacgggtggtatgatgattcgagctctt 180
|||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct: 321 cccatctgttgtggttatctcactatccagcgcacgggtggcatgatgatttgagctctt 380
Query: 181 actgcagcataagtagattcagcatctggctaatttactgggctagccaagcttgacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgcagcataagtagattcagcatctggctaatttactgggctagccaagcttgacaaa 440
Query: 241 ctcttccttgatgaatagtttcctagacttacaatagtcttatagatggtttctaaaatt 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctttcttgatgaatagtttcctagacttacaatagtcttatagatggtttctaaaatt 500
Query: 301 atacaatctcagacctgcatgaggcatctcaggtttggtggctctgtctgcgaggggagg 360
|||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 atacaatcccagacctgcaggaggcatctcaggtctggtggctctgtctgcgaggggagg 560
Query: 361 ttccctattctattgctgtgaaga 384
||||||||||||||||||||||||
Sbjct: 561 ttccctattctattgctgtgaaga 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
