BAC Information

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BAC

Clone NameMSMg01-133N08
Chromosome1 (Build37)
Map Location 188,084,707 - 188,085,011
singlet/doubletsinglet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133N08.T7 (MSMg01no133_n08.b1)MSMg01-133N08.TJ (MSMg01no133_n08.g1)
ACCAG340702AG340703
length708709
length of high quality
(start - end)
312 (43 - 354)92 (150 - 241)
definitionCHROMAT_FILE: MSMg01no133_n08.b1 PHD_FILE: MSMg01no133_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:45 2005CHROMAT_FILE: MSMg01no133_n08.g1 PHD_FILE: MSMg01no133_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGATGTCTGCCTGTTTTTTTGGGGGGGGGGCACTCAGGTGGCACACT
CGGGCTGGAATCTAAACCCAAATCTGGGACATGGGAACACACTTGTGCTT
TTGATAAAAGGGATATTACCTAAACAGCTTCACCCAGGTGTTTCCAACAA
GGCTCATCTAGACAGACAAGCCATGTATGCTAGAGTCCTATATATTCGAA
AATAGGTCTCTGGCCCAAGTCACAGTGTGAACTTGGGAATTATTCTTTGT
AGGTGTGAGAGATGTGTTGTAATGTCTAGGAAAGAATTGATGGAGAACGA
ATACAAGTGACCTCGGAAGCGATGCCCCCCNAGAGNTTAGAAACAGCAGA
GATACCACAGATGGAAAAATACTAAACAACACGCGGCATGTGTTCAATAA
GAGGAGAAAGAAAAGATTCCCACATTCTACAGGAGCAGCGCTAATGCAAA
TATACTACACTGGGGTCCTGAGTGAATCTGAATTATGCGCAGTTTGAATT
ATGCTCATATTGTATTTGCAGTCAAAGTGCTGTGTGGGACTACGCCTCCA
GATTGTACTTTCCCAGGGATAGCCATAATGCACACTTTCTGGCCCAATTT
CTGTTTAGGTTTCGCCCACATTCCCGTAATCCCCATTTAACCTCCTTAAT
TCTCCTTA
ACGATGCAGTGAGAGGCCTGGCGACGCCTGGATTCGTACTGGGGGNGAAC
TATAGAAGGATTCCTGAAATTCTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGTAGTCGCACGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGCTCCTCACAACATTTTACATAGTACTACCATAGGACCCAG
CAATACCTCTCCTGGGTACATATCCACAACATGCTTCCACATGTAACAAC
GACACATGCCCCACTATCTTCACAGTTTCCTTACTTATAATAGCTACGTA
CTCGTGACGAACTTCTACGCCCCTCACCTGATTGATGGCCACCGACAATG
TGTTACACCCACTTATTGCACCTTTACCCATCTCCCCCCCACTATCGCTC
TTCTGATACTCTCATTTTTTTGAATGGACCTGCTGGTCTTCTTCCCGATC
GAGGTCTCATTTCTTCTCTCACATCCCTCCCTTATTTATCCTCCGGCCCC
CTGGCCTCTTCTTCTCCCTTCCTTCATCTCCTCCCATCTCCCATCTCATC
TGCCCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_n08.b1 MSMg01no133_n08.b1 CHROMAT_FILE:
MSMg01no133_n08.b1 PHD_FILE: MSMg01no133_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:45 2005
         (312 letters)



>mm_chr1_188084503_188085214
          Length = 712

 Score =  491 bits (254), Expect = e-143
 Identities = 293/310 (94%), Gaps = 10/310 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagatgtctg-cc---tgtttttttggggggggggcactcaggtggcacactcg 60
           |||||||||||||||| ||   |||||     ||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatgtctgtccagatgttt-----gggggggggcactcaggtggcacactcg 259

                                                                       
Query: 61  ggctggaatct-aaacccaaatctgggacatgggaacacacttgtgcttttgataaaagg 119
           |||||| |||  |||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggctgggatcagaaaaggaaatctgggacatgggaacacacttgtgcttttgataaaagg 319

                                                                       
Query: 120 gatattacctaaacagcttcacccaggtgtttccaacaaggctcatctagacagacaagc 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacattacctaaacagcttcacccaggtgtttccaacaaggctcatctagacagacaagc 379

                                                                       
Query: 180 catgtatgctagagtcctatatattcgaaaataggtctctggcccaagtcacagtgtgaa 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 catgtatgctagagtcctatatattcaaaaataggtctctggcccaagtcacagtgtgaa 439

                                                                       
Query: 240 cttgggaattattctttgtaggtgtgagagatgtgttgtaatgtctaggaaagaattgat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttgggaattattctttgtaggtgtgagagatgtgttgtaatgtctaggaaagaattgat 499

                     
Query: 300 ggagaacgaa 309
           ||||||||||
Sbjct: 500 ggagaacgaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)