BAC Information

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BAC

Clone NameMSMg01-133P10
Chromosome1 (Build37)
Map Location 121,527,908 - 121,528,214
singlet/doubletsinglet
Overlap geneEpb4.1l5
Upstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b
Downstream genePtpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133P10.T7 (MSMg01no133_p10.b1)MSMg01-133P10.TJ (MSMg01no133_p10.g1)
ACCAG340798AG340799
length696715
length of high quality
(start - end)
311 (47 - 357)305 (70 - 374)
definitionCHROMAT_FILE: MSMg01no133_p10.b1 PHD_FILE: MSMg01no133_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:55 2005CHROMAT_FILE: MSMg01no133_p10.g1 PHD_FILE: MSMg01no133_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACCGAAGAATACCAAATGGCTGAGAAGCACCTGAAAAAAAT
GTTCAACATCCTTAATCAAATCAAGTCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGACAGCAGATGCT
GGCGAGGATGTGGAGAAAGAAGAACACTCCTCCATTATTGGTGGGATTGC
AAGCTGGTACAACCACTCTGGAAATCAGTCTGGCGGATTCTCAGAAAATT
AGACATAGTACTACCGGAGGATCCAGCAATTCTTCTCCTGGGCGTATACC
CAGAAGATGTTCTAACTTCCACCACCGACACATGCTCCACTATGTTCATA
GCAGCTTTATTTATAATAGCCAGAAGCTGGAAAGAACCCATAGGTCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACT
ACTCAGCAATTAAAAACAATGAATTCATGAAATTCTTAGGCAAATGGATG
AATCTGGAAGATATCATCCTGAGTAAGGTAACCCAATCACAAAAGAACAC
ACCTGATATGCACTCACTGACAAGTGGATATTAGCCCAGAAAACTGAGAA
TATCCATGGTACAATTTGTAAAACACATGAAACTCAAGAAGAATGA
GATGAAGTGAGAGCCTGGCGACGCCTGGTTTCGTATTTGGGTGAACTATA
GAAGGTTTCTAAAATTCCAGTCAGCTAGGAATAAAAGGTGAGATGCTTTT
GCTGTCTTAAAAAAATAGTATCAAACTATTATCTATACATACATACAGAA
AAATAAAATTTAATTCATCTATTTATTAATTTTGGTTATCTCCATGATGA
CTCCATAATTCAGTAGGCACCATACACGTTGGACTGCTTGAATTAAAATG
TGGTACATTAATTTTAGATGCCACATGATTAAGACTAAACTATATTACAT
TAATACTTTGGATCCTTATATTTTGCTGCCCACTTTAAATTCTGGTATAT
CAATAAAGTATATATCACAAGGTCATTAGGTAACTTGGCTTATATTATAT
GCTTTAGCAAACAAACTTTTCTTCCCACATTATCCCTAAAAACAAAAAAC
ATACCAAACTCAATCATTCGCCTTTGACCTATCAAGTTTATTGTACACCG
CAATAATATGACCTGTTCTTTCCCTACCTATTAATTTTATCCTGGGACTA
ACTGCGGCTATGCACCACGTATCTGAAAGGGCTTCTTACTCTCACCATGC
CACAACCACAAATGATTTACTCCTCACGCTCTCATCTATTTATTTACTCC
AACCCTTTTTCTTCTGGTTTTCCGTAACATCTGGATCTCTCGTCTCTCTG
CAAATCTCCCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_p10.g1 MSMg01no133_p10.g1 CHROMAT_FILE:
MSMg01no133_p10.g1 PHD_FILE: MSMg01no133_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:55 2005
         (305 letters)



>mm_chr1_121527708_121528414
          Length = 707

 Score =  574 bits (297), Expect = e-168
 Identities = 304/307 (99%), Gaps = 2/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagctaggaataaaaggtgagatgcttttgctgtcttaaaaaaatagtatcaaactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagctaggaataaaaggtgagatgcttttgctgtcttaaaaaaatagtatcaaactat 260

                                                                       
Query: 61  tatctatacatacatacagaaaaataaaatttaattcatctatttattaattttggttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctatacatacatacagaaaaataaaatttaattcatctatttattaattttggttat 320

                                                                       
Query: 121 ctccatgatgactccataattcagtaggcaccatacac--gttggactgcttgaattaaa 178
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 321 ctccatgatgactccataattcagtaggcaccatacacatgttggactgcttgaattaaa 380

                                                                       
Query: 179 atgtggtacattaattttagatgccacatgattaagactaaactatattacattaatact 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtggtacattaattttagatgccacatgattaagactaaactatattacattaatact 440

                                                                       
Query: 239 ttggatccttatattttgctgcccactttaaattctggtatatcaataaagtatatatca 298
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ttggatccttatattttgctgcccactttagattctggtatatcaataaagtatatatca 500

                  
Query: 299 caaggtc 305
           |||||||
Sbjct: 501 caaggtc 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 707
Length adjustment: 9
Effective length of query: 296
Effective length of database: 698
Effective search space:   206608
Effective search space used:   206608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)