BAC Information

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BAC

Clone NameMSMg01-134E01
Chromosome1 (Build37)
Map Location 183,403,928 - 183,404,687
singlet/doubletsinglet
Overlap genenone
Upstream gene6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3
Downstream geneCcdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134E01.T7 (MSMg01no134_e01.b1)MSMg01-134E01.TJ (MSMg01no134_e01.g1)
ACCAG341012AG341013
length1,1611,129
length of high quality
(start - end)
760 (94 - 853)163 (90 - 252)
definitionCHROMAT_FILE: MSMg01no134_e01.b1 PHD_FILE: MSMg01no134_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:28 2005CHROMAT_FILE: MSMg01no134_e01.g1 PHD_FILE: MSMg01no134_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGACCCCTTNNNNAACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCATATGATTAGGAAGCAATACAGCCGGCTTGAGTT
AATCTGCAACAGCCAGTGCCCCTTGAAGCACTGCACGCAGCTCAGCAGAG
CTGCTGTAGTCTTTGTGGCTGATGTGGAAGAAGGCTCAAACCAATGGTGA
CCAGGTAGTTCAGATACTCAGAGCTGAGTGGCCCGTTTGGTTCCAGAATC
CTGGAGCAAGGCTGGAAGGAGTTTACAATGCATTAATCTCACAAGTGAGG
TCTTTTGTAGCCTCTGAGCTCTGCTTTCCTGGAGACTGATGCATGTATTT
GTTTCTGACACCCATTCTGCAGCCCGCCCCATTCAGGGACCCTATAGATA
GATGGCAGGTTTTGAAAACAGAATGCAAAGGTTTATCTGGTGGACCAGGA
GAAGAGATTATGTCTTTTGTAAGCTGTGACAAAATGTGTAGTCAGTTCAT
GACATGAAGCTGCACACTTCAGACCCCCCACAGCCTAAGTGGATAGTTGC
TTACGTAAGATTGTTACATGCAAACTAATTGATCTGTTTATTCATTCATG
TATTGTTTATTCACTCACTCATTCATTTATACCATAAATGCTCAAAAAAT
ACTTCTGCCATGGATAGGCATGAATGTGCAAAGATGAAGAGGAGGCTGTT
GTCAGCAGACCTCACATCTGTTTCTCTGCTTCCCTCTCCCGTTCCCTCCT
CCTGTTCCTCCCCCATCCCATCCTTCCTCCCATTCATCATTTCATCTACG
TAGGATGCCCCTGGGGACCTCGATGCCCTCCGTCCTCTATATTACAGCTC
TGTGAAATGCCATAGCTCCTGCATGGGCTCCCCCTCTCTGGGCTTTATAG
ATGCTTAGGGCACCTTCCTTTCCATAAAAAAGGGGTGACGAAAAAGACCC
CCCCCCCCCTTGAAAACTTTTCTTTAAAAGAAGGGGTCTTTGCCCTGCCC
TAAAAAAATTAATAAATTTCTTTCTAAAAACCAAAAAAGTGGCCGAAAAG
GGGCCAGGGGAAAAAAACCCCCCCTGGGGGCCCGTTGGCCTTTTTTTTTT
TTTTCTCTCCCCCCCCCCCAAGATCGTTGGGTGGGTTTTTTTTTCCCAAA
ACAAAAAATTC
NCTCCCCTTTNTTAAACAAGTGATGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTACAGCTTCATCTGGAGGCA
GCTAGGAGGAGGGTCTCACCATCCATGCCCACAGTGACACACTTCCTCTA
ACAAGGCCACACCTCCTGGTAGTGCCACTCCCTGAACCAAGCATATACAA
GCCATCACAGAGAGGGAAAGGGAAGGAGGGAAGAGGGAGAGAGGGAGAGA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNGNNNNNNGNNNN
NNGNNNNNNNNNNNNNNNNNNNGNGNGGGGNGGGGGGGGGGGNGGGGGTT
TTTTTTNGGGGGTNGGGGGGGGGGNTTTTGTGTGTTTTTTTTTCCCTGGT
TTTTTTTGTTTTTTTTTTTNTTTTTTTTTTTTGTTTTTTTGTTGNTTTTT
TTTTTTGTTTNTTTTTGTTGTTTTTTTTTTGTTTTTTTTTTTTTTTTTTT
TGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTGTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTT
TTTTTTGGGTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTGTTTTTT
TTTTTTTTTTTTTTGTGTGTTTTTTTTTGTGTGTTTTTTTTTTTTTTTTG
TGTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTTTTTTTT
TTTTTTTGTTTTTTTTGTTTTTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_e01.b1 MSMg01no134_e01.b1 CHROMAT_FILE:
MSMg01no134_e01.b1 PHD_FILE: MSMg01no134_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:28 2005
         (760 letters)



>mm_chr1_183403728_183404887
          Length = 1160

 Score = 1353 bits (700), Expect = 0.0
 Identities = 745/760 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagttaatctgcaacagccagtgccccttgaagcactgcacgcagctcagcagagctg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ttgagttaatctgcaacagccagtgccccatgaagcactgcacgcagctcagcagagctg 260

                                                                       
Query: 61  ctgtagtctttgtggctgatgtggaagaaggctcaaaccaatggtgaccaggtagttcag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 261 ctgtagtctttgtggctgatgtggaagaaggctcaaaccaatggtgaccaagtagttcgg 320

                                                                       
Query: 121 atactcagagctgagtggcccgtttggttccagaatcctggagcaaggctggaaggagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactcagagctgagtggcccgtttggttccagaatcctggagcaaggctggaaggagtt 380

                                                                       
Query: 181 tacaatgcattaatctcacaagtgaggtcttttgtagcctctgagctctgctttcctgga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaatgcattaatctcacaagcgaggtcttttgtagcctctgagctctgctttcctgga 440

                                                                       
Query: 241 gactgatgcatgtatttgtttctgacacccattctgcagcccgccccattcagggaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactgatgcatgtatttgtttctgacacccattctgcagcccgccccattcagggaccct 500

                                                                       
Query: 301 atagatagatggcaggttttgaaaacagaatgcaaaggtttatctggtggaccaggagaa 360
           ||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 atagatagatggcaggaaatgaaaacagaatgcaaagttttatctggtggaccaggagaa 560

                                                                       
Query: 361 gagattatgtcttttgtaagctgtgacaaaatgtgtagtcagttcatgacatgaagctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagattatgtcttttgtaagctgtgacaaaatgtgtagtcagttcatgacatgaagctgc 620

                                                                       
Query: 421 acacttcagaccccccacagcctaagtggatagttgcttacgtaagattgttacatgcaa 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 acacttcagaccccccacagcctaagtggatagttgcttacataagattgttacatgcaa 680

                                                                       
Query: 481 actaattgatctgtttattcattcatgtattgtttattcactcactcattcatttatacc 540
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actaattgacctatttattcattcatgtattgtttattcactcactcattcatttatacc 740

                                                                       
Query: 541 ataaatgctcaaaaaatacttctgccatggataggcatgaatgtgcaaagatgaagagga 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 ataaatgctcaaaaaatacttctgccatggataggcatgaatatgcaaagatgaagagga 800

                                                                       
Query: 601 ggctgttgtcagcagacctcacatctgtttctctgcttccctctcccgttccctcctcct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggctgttgtcagcagacctcacatctgtttctctgcttccctctcccgttccctcctcct 860

                                                                       
Query: 661 gttcctcccccatcccatccttcctcccattcatcatttcatctacgtaggatgcccctg 720
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 861 gttcctcccccatcccatccttcctcccattcatcatttcatctacgcaggatgcccctg 920

                                                   
Query: 721 gggacctcgatgccctccgtcctctatattacagctctgt 760
           ||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 921 gggacctcgatgccctctgtcttctatattacagctctgt 960


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1160
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1150
Effective search space:   862500
Effective search space used:   862500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)