Query= MSMg01no134_i18.b1 MSMg01no134_i18.b1 CHROMAT_FILE:
MSMg01no134_i18.b1 PHD_FILE: MSMg01no134_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:03 2005
(610 letters)
>mm_chr1_75420945_75421954
Length = 1010
Score = 1104 bits (571), Expect = 0.0
Identities = 601/611 (98%), Gaps = 2/611 (0%)
Strand = Plus / Minus
Query: 1 gggaatggtctcgc-ccgttgctgcccgcagtcggggtactgcggagggaacaaagcagg 59
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gggaatggtctc-ctcagttgctgcccgcagtcggggtactgcggagggaacaaagcagg 752
Query: 60 ccagcataagaggtaaaagatgtcctactgtcattagtccaggatcagccccagttgata 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ccagcgtaagaggtaaaagatgtcctactgtcattagtccaggatcagccccagttgata 692
Query: 120 aagtggacctgggaggggcctcttcctgcagggggagaacggggtcagagggcactcact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aagtggacctgggaggggcctcttcctgcagggggagaacggggtcagagggcactcact 632
Query: 180 gctcagcagggaatcagctgcacagaaaaatggaggccccgggtgggaagggattagcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gctcagcagggaatcagctgcacagaaaaatggaggccccgggtgggaagggattagcaa 572
Query: 240 ccccacatttctctgtggatgctctttccacccgccaccccctccatttctaccctcttc 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ccccacatttctctgcggatgctctttccacccgccaccccctccatttctaccctcttc 512
Query: 300 cagccagcttgtcccccacgccctcccaccagtcctacacccccacagccttgaccaggg 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 catccagcttgtcccccacgccctcccaccagtcctacacccccacagccttgaccaggg 452
Query: 360 cttagaaatagccttctcaagcccagctgagtcgaaagcaagcttagatccattctcccc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttagaaatagccttctcaagcccagctgagtcgaaagcaagcttagatccattctcccc 392
Query: 420 aaaactgagccaggatagagttgacagcttctaaagatcatgtgcacaccctggcttggt 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaaactgagccaggatagagttgtcagcttctaaagatcatgtgcacaccctggcttggt 332
Query: 480 ggcttcctcctgaacgtccgtccggctggcctagaaacctggctgccttcagtaatactt 539
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 331 ggcttcctcctgaatgtccgtccggctggcctagaaacctggctgccttcagtaatgctt 272
Query: 540 ctttgccaggtaggaggacactgggaggaatacctccttccctgcagccccaggacattt 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctttgctaggtaggaggacactgggaggaatacctccttccctgcagccccaggacattt 212
Query: 600 gaacaagcaat 610
|||||||||||
Sbjct: 211 gaacaagcaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_i18.g1 MSMg01no134_i18.g1 CHROMAT_FILE:
MSMg01no134_i18.g1 PHD_FILE: MSMg01no134_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:03 2005
(692 letters)
>mm_chr1_75260830_75261921
Length = 1092
Score = 1249 bits (646), Expect = 0.0
Identities = 682/696 (97%), Gaps = 5/696 (0%)
Strand = Plus / Plus
Query: 1 cctctgtctccccggctcaggtttggtgagaaggactcaagtactatagggaacaggaaa 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctctgtctccctggctcaggtttggtgagaaggactcaagtactatagggaacaggaaa 260
Query: 61 gatacgtgggccagggagtataaaccgtgatacaagaagcttaagagatcagaacaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatacgtgggccagggagtataaaccgtgatacaagaagcttaagagatcagaacaggaa 320
Query: 121 ctcttaccatggttccattatcgctactggcgtcttcctgaaaaatcagagatggttagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttaccatggttccattatcgctactggcgtcttcctgaaaaatcagagatggttagg 380
Query: 181 cactcgcgctgggatagcaagggatgagctagttgcttacccttgtctgaagaagtcaaa 240
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 381 cactcgcactgggatagcaagggatgagctagttgcttactcttgtctgaagaagccaaa 440
Query: 241 aagcacctgccccacagggtagtggtgagaatttatgtaattatacactgcagcaagacc 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aagcacctgccccacagggtagtggtgagaatttatgtaattagacactgcagcaagacc 500
Query: 301 tggacctgcatatcgcaaacactcctacgcattaacttcttttcctcttgcaatctactc 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tggacctgcatatcgcaaacactcctacgcattaacttcgtttcctcttgcaatctactc 560
Query: 361 atctgactcttgaaacggttaccttctttagtatttgcttttcgcttagttggtacatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 atctgactcttgaaacggttaccttctttagtatttgcttttcgcttagttggtacaaag 620
Query: 421 caatcatacacaaatgtacactgtgacagtcagtacatgtaca----tgtatgcaatgtg 476
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 621 caatcatacacaaatgtacacagtgacagtcagtacatgtacacggatgtatgcaatgtg 680
Query: 477 taaatgaccagatccacatacctggcgtatctattacttcagacctttatagtttctttg 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taa-tgaccagatccacatacctggcgtatctattacttcagacctttatagtttctttg 739
Query: 537 tgttgggaatacttagcatcttctctgtcagctcatttgaattagcccagaaatcgtcgc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgttgggaatacttagcatcttctctgtcagctcatttgaattagcccagaaatcgtcgc 799
Query: 597 cgcctgtagatatcctgctgtgcttccgaacatcagccttgctgcttgcccagctgcacc 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cgcctgtagatatcctgctgtgcttccgaacatcagccttgctgcttgcccagctgcact 859
Query: 657 tggtgagtactgccatttgttattagctctggctgt 692
||||||||||||||||||||||||||||||||||||
Sbjct: 860 tggtgagtactgccatttgttattagctctggctgt 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
