NNNGGGGGCATTGCGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAA
TTCACCAAGGAGGCAGGACCTCTTCCTACAGCCTAGTGACTCCATTGCAG
GAGTGTGGCCCATATCACTAAGCACCAGGCTCAGAGTACCTAAGAAATGA
AAAGACAGAAGAAAACCATCTACAAGCTGTTTGCCGAATGCTTGGGATAG
CGTCTCTGCCTCTAAAAGAGGTTTCCTCCTTCTCTCCTCCCCCCCCCAAC
CCCGCCCCCGCTCATACACGCTGGCATTTCACAACCCTGCCAGTTCTTAA
ATCTTTTCTTTTACCTCCACTGTTCAGTCATCCATAAAGCTGAACCTCTG
GTAAGCGAGGATTTTCTTCGAGAGAACTTAGACTTCCGCAAAAGGGACTT
TATATGCCAGGTATTAAAGGAAACTCAGAGCTCAGCCTTTGAAGGCAGTT
TTTTTTCCCCCCCCCGCTTCGGACCTCCCACAGGGAAAAAAAGTTAGTGT
TCCTGCAAGAATCCTTGTCTGCGGTCTAAATTCCAGCTCAAGGAATTACA
TCCTTCCTTATCCGGATTTAGCCCTTCCTGTGTGTTTTGACGGTCTTTAC
TATCTGTGTGCTTCCTTGGAGAGGCAGCATTTTTCCTGAGGATATTTTGC
CTTTCCGTAAGAGCACAGAGATGGGTGAGCTCTCTCAGCGTTGCAAATCA
TCCACAGATGAATTATAGGCCAACCCAGAAGCAAGGGAGCAAAGGCGCCC
GGAGCACAACCTTGGAGGATGAAAGACCTCACGAGACCCACCACTCACGC
TCCGCAACGTGCGTAATTAAATGGCTGCTGTTATTTACTTCGTGGTGGGG
AGCTGCCACCGCCCTCTGGAGTTTTATAACTCTTCCTAGCAGCAACTCTA
GCACTAAATGAAAGTCTTCTTGCTGGAGAGTTGTTTAACCAAACTTCAGT
TCCTGCTTTGGACTGTCCCCCGCGAAAAGGCCTTAGGCTCTACTTTGGTA
TAAAAGAAATTGTGGAAATGGTTTTTTTGGGTTTTTAAAAAGACTAAAAA
TCCCCCACGCATCCCCCTGGGTGGGGTGGAAAATTCCCCTCCCTATATTC
CCTTTTTGTAAAAAACCCTTCCCTCTCTCACTTTTTGAAAAAATTAATAG
GGGGTCCCCCTTTGATTTTGGCTTGGTCCAATCGGGGACACCTAAAAAGG
GATAATTAGAGTGTTGCNACATTTGTATCATTGGTACTTTTC

NNNGGGAGAGGAGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGGAGTTCTTAACAACCCTAAACAGTT
GTCACCATCTTAAAAACACCTGGTGTTTTCTTCATAGAACTTCTAATTTA
TATAGACATTGAGGAGAAAATATTGTTCTTTTGCTGAAATTATATTTCAC
TCAATGTAAATACCAAGATAATTCCTTTGTAGAAAATATGTAAAAAGAGC
CCGTCACTGCTCTTTTGACAGAAGTTCTTGTATACACTTGGATTTGCACA
TTTTAATGTGAGTGTCCACCACAGAGCTGGTTGCCATAAGTGCCCTCTGC
TCAGGAGTGGTCTGGTTGACCTCTCACACTAGTGTGACAGTGTCTGTATG
GTGAAGTCACTGCTCTGTCCTTAAGCCCAATGTGTACACTTGTCATATTT
TTCTCCCCCCCCCTTAACCTACTGTGGTAACTCTGAAAGACCAAAGGATC
TAACTCCCTGGGGGTTGGCACCCGGCTCAGGTTGGAAGCAGTCTGGACCT
CTGCAGCCCTCCGAGGACCAGGTATTTGTCTCCTTGCAGTTTTCCCTTGG
GTGTGAAATTAATGTTCTTTCCTCCATTTAGAAAGATGTCTTCAAACAGA
TGCCGCTTTGCATTGTCGTTAGCAAACCATTGTGACTTGTTTTTGTCATC
TGTTTTCAGCTGTCTGCTCCTGGCCCTGGCAGTAACAAGAGGATGGTTCA
CTTCTCCCCAGACGCCCATCGCCATGAGTGAGTGCTCCTGTTTCTGTGCC
TTGCTTGGTTTGTCCATCCATTTCTCCTAGGAACTCTTGGTCACTCTTGT
GTGAGCTAAGACACTTTAAATTTGTGCTCATTTTTTAATCCAATGTATCT
CCCCGATGTGTTTCTTCTTATTTATCAACTTGTTCTGAACCCTTGGTCTT
ATTCAAAACTTGTTTTTTTAATTCTATTTTTTTAAAACCTTGCGCCTCAT
CCTCCTTTTCCCTATATTACTATCCTATTTTATCATATTCTATCCTTTTT
ACTTTATTTTTTTTTAATTCCTTTATTTTCCTTTTTTCTTTTTCTTCTTC
ATAATTATTCTCCCCATTTCTATCTTATTTTTCCTTCTATTTCTTTTCCC
TTCTTTCTATCTATCTCCTATAATCTTTTTTTTTATACTTCTTTTCTTTC
TTTTATAGTA

Query= MSMg01no134_j09.b1 MSMg01no134_j09.b1 CHROMAT_FILE:
MSMg01no134_j09.b1 PHD_FILE: MSMg01no134_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:08 2005
         (344 letters)



>mm_chr1_189271249_189271992
          Length = 744

 Score =  642 bits (332), Expect = 0.0
 Identities = 341/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcctgcaagaatccttgtctgcggtctaaattccagctcaaggaattacatccttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgttcctgcaagaatccttgtctgcggtctaaattccagctcaaggaattacatccttcc 485

                                                                       
Query: 61  ttatccggatttagcccttcctgtgtgttttgacggtctttactatctgtgtgcttcctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 484 ttatccggatttagcccttcctgtgtgttttgacggtctttactatctgtatgcttcctt 425

                                                                       
Query: 121 ggagaggcagcatttttcctgaggatattttgcctttccgtaagagcacagagatgggtg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 424 ggcgaggcagcatttttcctgaggatattttgcctttccgtaagagcacagagataggtg 365

                                                                       
Query: 181 agctctctcagcgttgcaaatcatccacagatgaattataggccaacccagaagcaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agctctctcagcgttgcaaatcatccacagatgaattataggccaacccagaagcaaggg 305

                                                                       
Query: 241 agcaaaggcgcccggagcacaaccttggaggatgaaagacctcacgagacccaccactca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agcaaaggcgcccggagcacaaccttggaggatgaaagacctcacgagacccaccactca 245

                                                       
Query: 301 cgctccgcaacgtgcgtaattaaatggctgctgttatttacttc 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cgctccgcaacgtgcgtaattaaatggctgctgttatttacttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no134_j09.g1 MSMg01no134_j09.g1 CHROMAT_FILE:
MSMg01no134_j09.g1 PHD_FILE: MSMg01no134_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:08 2005
         (377 letters)



>mm_chr1_189127370_189128146
          Length = 777

 Score =  687 bits (355), Expect = 0.0
 Identities = 370/375 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggagttcttaacaaccctaaacagttgtcaccatcttaaaaacacctggtgttttct 60
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 201 tgtggagttcttaacaaccctaaacagttgtcaccatagaaaaaacacctggtgttttct 260

                                                                       
Query: 61  tcatagaacttctaatttatatagacattgaggagaaaatattgttcttttgctgaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatagaacttctaatttatatagacattgaggagaaaatattgttcttttgctgaaatt 320

                                                                       
Query: 121 atatttcactcaatgtaaataccaagataattcctttgtagaaaatatgtaaaaagagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttcactcaatgtaaataccaagataattcctttgtagaaaatatgtaaaaagagcc 380

                                                                       
Query: 181 cgtcactgctcttttgacagaagttcttgtatacacttggatttgcacattttaatgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtcactgctcttttgacagaagttcttgtatacacttggatttgcacattttaatgtga 440

                                                                       
Query: 241 gtgtccaccacagagctggttgccataagtgccctctgctcaggagtggtctggttgacc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtccaccacagagctggttgccagaagtgccctctgctcaggagtggtctggttgacc 500

                                                                       
Query: 301 tctcacactagtgtgacagtgtctgtatggtgaagtcactgctctgtccttaagcccaat 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcacactagtgtgacagtgtctggatggtgaagtcactgctctgtccttaagcccaat 560

                          
Query: 361 gtgtacacttgtcat 375
           |||||||||||||||
Sbjct: 561 gtgtacacttgtcat 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)