Query= MSMg01no134_l16.b1 MSMg01no134_l16.b1 CHROMAT_FILE:
MSMg01no134_l16.b1 PHD_FILE: MSMg01no134_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:25 2005
(624 letters)
>mm_chr1_12660371_12661392
Length = 1022
Score = 1110 bits (574), Expect = 0.0
Identities = 611/624 (97%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 agtagtatattgaccgtattttccaggctaaaatcacaaaacgtaatcccttaataatat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agtagtatattgaccatattttccaggctaaaatcacaaaacgtaatcccataataatat 260
Query: 61 tttaaatgaatgactgaatttattggtagaaaggtatttgaaaagatattaaaattaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaatgaatgactgaatttattggtagaaaggtatttgaaaagatattaaaattaagg 320
Query: 121 agcattcaaggaattttaaaatgaattacctttgcaggaaaaaaagatatacaattatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcattcaaggaattttaaaatgaattacctttgcaggaaaaaaagatatacaattatag 380
Query: 181 tatattgtatttgggaacgatcccagaaaatggaggacggcttatttaaagagcaagggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tatattgtatttgggaacgatcccagaaaatggaggacggcttatttaaagagcaggggg 440
Query: 241 aaacgtgtgcagttgctgctctgttatttctccacaggaaagtccttacagctctgccag 300
|||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 441 aaac--gtgcagttgctgctctgtgatttctccacaggaaagtccttacggctctgccag 498
Query: 301 agctgaagaactccctgtatttgtgtagctcccttagcttccggctgaaatccagaggca 360
||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct: 499 agctgaagaactccctggacttgtgtagctcccttagcttccagctgaaatccagaggca 558
Query: 361 ggagatggactgttccagccaaaaacatacgtttcactcccgaatgagatagctgtcaga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 ggagatggactgttccagccaaaaacatacgtttcactcctgaatgagatagctgtcaga 618
Query: 421 gcaaactgtttctagaagcaagaagaaatcactctctgagttaacgttaatttcagggtc 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcaaattgtttctagaagcaagaagaaatcactctctgagttaacgttaatttcagggtc 678
Query: 481 cctcacatggagattctaggctcttgccctcatggctgagacaccctcctctaatcactt 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 cctcacatggagattctaggctcttgccctcacggctgagacaccctcctctaatcactt 738
Query: 541 gcttgcgcgccaatggagggtttactttgggtttagtgttctctggtgagttaggcaacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gcttgcgcgccaatggagggtttactttgggtttagtgttctctggtgagttaggcaacc 798
Query: 601 tgctgttttcatgagtgctctggg 624
||||||||||||||||||||||||
Sbjct: 799 tgctgttttcatgagtgctctggg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_l16.g1 MSMg01no134_l16.g1 CHROMAT_FILE:
MSMg01no134_l16.g1 PHD_FILE: MSMg01no134_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:25 2005
(652 letters)
>mm_chr1_12811878_12812928
Length = 1051
Score = 1145 bits (592), Expect = 0.0
Identities = 637/652 (97%), Gaps = 1/652 (0%)
Strand = Plus / Minus
Query: 1 cttttgttgggtgttagtccattgcatactgttttccgttctcactgatatcagctgatg 60
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 851 cttttgtggggtgttagtccattgcatactgttttccgttctcactgataacagctgatg 792
Query: 61 tgggggccacgcctagatttcataattacagctggtatcaaaagctttttgaggtagaag 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 791 tgggggccacgcctagatttcataattacagctgatatcaaaagctttttgagctagaag 732
Query: 121 tgaacatacagactgttttcctttttcagctctggtatagatctcacgatgcatgtaggt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgaacatacagactgttttcttttttcagctctggtatagatctcacgatgcatgtaggt 672
Query: 181 tagatggcctctcgattcatgatgggaagttccatcatgtcatcaggagtggctcactgc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 671 tagatggcctctcgattcatgatgggaagttccatcgtgtcatcaggagtggctcactgc 612
Query: 241 tcagaggctcagcatccacctagttcttcagtaagtgctctttagaacacagcccgatga 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 611 tcagaggctcagcatccacctagctcttcagtaagtgctctttagaacacagcctgatga 552
Query: 301 cctactttgatggagccagtgcctttggcatagctgtccctctgagacccatctttgtta 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cctactttgatggagtcagtgcctttggcatagctgtccctctgagacccatctttgtta 492
Query: 361 gcaagagggagcctgggtagtgacaagaatatgaaggcttcttagacatacagatctgct 420
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 491 gcaagagggagcctgggtagtgacgagaatatgaaggcttcttagacagacagatctgct 432
Query: 421 ggtacagagatgtctctgagtttgccctcatgaccacgcagaaaccttaggggtacacaa 480
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 431 ggcacagagatgtctctgagtttgccctcatgaccaag-agaaaccttaggggtatacaa 373
Query: 481 atgcctgaatactgtttaagtcagcggtggagagcacaggaggacatagagaatgtctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgcctgaatactgtttaagtcagcggtggagagcacaggaggacatagagaatgtctgt 313
Query: 541 tgcactcacctgcccaggctgctcacaggctgtctggtatctggcttgctggcacagttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcactcacctgcccaggctgctcacaggctgtctggtatctggcttgctggcacagttc 253
Query: 601 cttgaccctctcatatttgggcaagtggtttgactgttggatattcttgccg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cttgaccctctcatatttgggcaagtggtttgactgttggatattcttgccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
