BAC Information

Click to search

BAC

Clone NameMSMg01-135C14
Chromosome1 (Build37)
Map Location 62,199,457 - 62,319,765
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135C14.T7 (MSMg01no135_c14.b1)MSMg01-135C14.TJ (MSMg01no135_c14.g1)
ACCAG341691AG341692
length713705
length of high quality
(start - end)
392 (74 - 465)403 (79 - 481)
definitionCHROMAT_FILE: MSMg01no135_c14.b1 PHD_FILE: MSMg01no135_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:13 2005CHROMAT_FILE: MSMg01no135_c14.g1 PHD_FILE: MSMg01no135_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,199,457 - 62,199,848)(62,319,363 - 62,319,765)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGACAGCGCGGA
ATTCATCAGACTTTACCTATCCTTAATGCTGCTCTCAACTTTCCAGCCAG
GACCCAGATCTTTACCGTTTTCAGCTTGGAGCAGAAGAGTAACTGAGATA
GCCATGGCTCTTTATCTGACATCTTGTTGTCGTGAATGTTAAACAATAGG
AACATGTTTACAATCATGTTATAATAGGAACATGTTTCCATGAAGGTGGT
GCTTGCTTCAAGTTCATCATTTCCTCTGGCAATTTGTCTCTCTCTTTGGG
ATTAAAGGAGCCAATAATTGTTCTCGGATATTATTTTCATCTTTACAAAC
ACTTGTTAGCTCCACTGCGTATGACTCGGAGGCTTCCAGTGCATTTGTGC
ATTTCAGTCATACACACTCCTATTAGTGCTTCTCGCTCATCCCTTCCTTA
ATCTGCGCTAGGTTAGGCAGGCCAGACTTTCTATTTCTTTCTATAATACA
TTTTCTCTGGTTTTTGCAACCTCCCTTTCTGCCTTAAAGGTAGAAATAAA
TTAATTAACCAGAAGGTGAAAACTTGGAATTGTTCCATTGAGTCCAACTG
ATGCAAGCTTTGATATATATTGCTTTGAACATGCCCGACTGTGTTACTAA
CTTTCGCTTCCCTGATACTATAAACTGTAATCCCTGTGCATTCTCCAAAA
ATAATCTTCACCC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAACACTGAAATAAACTA
TTTTTAAAAACACTGTGGAAAAATCCAAATGGATGACAGGCACAAAAATT
AGGGGTCTTTCTCCAAATATTCTCTGACACAGATGCCTATCTTTAGGATC
AACGACAAATGAACAAACATAATGAAAAAGAGAGGGTGCGGCAATGACTT
AATTAATAGAACACATTTTATTTAAAAGGTTAAATTTGGAACAATCATCT
TTTCTGCACATGCTTGGTGCTGGGAAGCAATTTAAATAACAGTGGCAAAT
GAGAAAATGAGGTAAAATTACACACACCACCAATTTTTTAAATGGCAAGT
ATTATAATTAATACCCAACTTCCTTTATAACCCACATCACCTTAGAGTGA
CTATTAGTTATCTCCCGGGACTGGAGCTTAAGTGTAGTTGTTCAATTGCA
TTATATTGAGATAGTGCAGGGACTGAAATGGTAGTAACATGATTCACAAC
AGGTCTAAACTTTTAAATGAAAAGGCTGTATAAGAAACTTGAAAATTAAG
TGGGCCCATGCATGGAAAGTCTTTCTATTCCAAGACAGCAAAGAAAAAAA
GTGGTCTGAAACAGAATTTCTGAGGGAAAAAAACCGGGGNTTTACAATTC
CGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_c14.b1 MSMg01no135_c14.b1 CHROMAT_FILE:
MSMg01no135_c14.b1 PHD_FILE: MSMg01no135_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:13 2005
         (392 letters)



>mm_chr1_62199257_62200048
          Length = 792

 Score =  727 bits (376), Expect = 0.0
 Identities = 388/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgctgctctcaactttccagccaggacccagatctttaccgttttcagcttggagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 taatgctgctctcaactttccagccaggacccagatctttaccgttttcagtttggagca 260

                                                                       
Query: 61  gaagagtaactgagatagccatggctctttatctgacatcttgttgtcgtgaatgttaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gaagagtaactgagatagccatggctctttatctgacatcttgttggcgtgaatgttaaa 320

                                                                       
Query: 121 caataggaacatgtttacaatcatgttataataggaacatgtttccatgaaggtggtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caataggaacatgtttacaatcatgttataataggaacatgtttccatgaaggtggtgct 380

                                                                       
Query: 181 tgcttcaagttcatcatttcctctggcaatttgtctctctctttgggattaaaggagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttcaagttcatcatttcctctggcaatttgtctctctctttgggattaaaggagcca 440

                                                                       
Query: 241 ataattgttctcggatattattttcatctttacaaacacttgttagctccactgcgtatg 300
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 ataattgttcacggatattattttcatctttacaaatacttgttagctccactgcgtatg 500

                                                                       
Query: 301 actcggaggcttccagtgcatttgtgcatttcagtcatacacactcctattagtgcttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcggaggcttccagtgcatttgtgcatttcagtcatacacactcctattagtgcttct 560

                                           
Query: 361 cgctcatcccttccttaatctgcgctaggtta 392
           ||||||||||||||||||||||||||||||||
Sbjct: 561 cgctcatcccttccttaatctgcgctaggtta 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no135_c14.g1 MSMg01no135_c14.g1 CHROMAT_FILE:
MSMg01no135_c14.g1 PHD_FILE: MSMg01no135_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:13 2005
         (403 letters)



>mm_chr1_62319163_62319965
          Length = 803

 Score =  772 bits (399), Expect = 0.0
 Identities = 402/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagaacactgaaataaactatttttaaaaacactgtggaaaaatccaaatggatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tttagaacactgaaataaactatttttaaaaacactgtggaaaaatccaaatggatgaca 544

                                                                       
Query: 61  ggcacaaaaattaggggtctttctccaaatattctctgacacagatgcctatctttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggcacaaaaattaggggtctttctccaaatattctctgacacagatgcctatctttagga 484

                                                                       
Query: 121 tcaacgacaaatgaacaaacataatgaaaaagagagggtgcggcaatgacttaattaata 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 483 tcaacgacaaatgaacaaacataatggaaaagagagggtgcggcaatgacttaattaata 424

                                                                       
Query: 181 gaacacattttatttaaaaggttaaatttggaacaatcatcttttctgcacatgcttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaacacattttatttaaaaggttaaatttggaacaatcatcttttctgcacatgcttggt 364

                                                                       
Query: 241 gctgggaagcaatttaaataacagtggcaaatgagaaaatgaggtaaaattacacacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gctgggaagcaatttaaataacagtggcaaatgagaaaatgaggtaaaattacacacacc 304

                                                                       
Query: 301 accaattttttaaatggcaagtattataattaatacccaacttcctttataacccacatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 accaattttttaaatggcaagtattataattaatacccaacttcctttataacccacatc 244

                                                      
Query: 361 accttagagtgactattagttatctcccgggactggagcttaa 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 accttagagtgactattagttatctcccgggactggagcttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)