BAC Information

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BAC

Clone NameMSMg01-135C20
Chromosome1 (Build37)
Map Location 62,199,459 - 62,319,765
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135C20.T7 (MSMg01no135_c20.b1)MSMg01-135C20.TJ (MSMg01no135_c20.g1)
ACCAG341703AG341704
length703701
length of high quality
(start - end)		291 (77 - 367)359 (76 - 434)
definitionCHROMAT_FILE: MSMg01no135_c20.b1 PHD_FILE: MSMg01no135_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:14 2005CHROMAT_FILE: MSMg01no135_c20.g1 PHD_FILE: MSMg01no135_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,199,459 - 62,199,749)(62,319,407 - 62,319,765)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAAGCTGGGCGG
AATTCATCAGACATAACGAAAAAATAATGCTGCTCTCAACTTTCCAGCCA
GGACCCAGATCTTTACCGTTTTCAGTTTGGAGCAGAAGAGTAACTGAGAT
AGCCATGGCTCTTTATCTGACATCTTGTTGTCGTGAATGTTAAACAATAG
GAACATGTTTACAATCATGTTATAATAGGAACATGTTTCCATGAAGGTGG
TGCTTGCTTCAAGTTCATCATTTCCTCTGGCAATTTGTCTCTCTCTTTGG
GATTAAAGGAGCCAATATTTGTTCACTGATATTATTTTCATCTTTACAAA
CACTTGTTAGCTCCACTGCGCATGACTCGGAGGCTTCCAGTGCATTTGTG
CATTTCAGTCATACACACTCCTATTAGTGCTTCTCGCTCATCCCTTCCTT
AATCTGCGCTAGGTTAGGCAGGTCAGACTTTCTATTTCTTTCTATAATAC
ATTTTCTCTGGTTTTTGCAACCTCCCTTTCTGCCTTAAATGTAGAAATAA
ATAAATAAACCAGAAGGTGAAAACTTGGAATTGTTCCATTGAGTCCAACT
GATGCAAGCTTTGATTTATATTGCTTTGAACATGCCCGACTGTGTTACTA
ACTTTGTCTTCCCTGACATTATAAACTGCAATCCCTGTGCATTTTCTAAT
AAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAACACTGAAATAAACTATTT
TTAAAAACACTGTGGAAAAATCCAAATGGATGACAGGCACAAAAATTAGG
GGTCTTTCTCCAAATATTCTCTGACACAGATGCCTATCTTTAGGATCAAC
GACAAATGAACAAACATAATGAAAAAGAGAGGGTGCGGCAATGACTTAAT
TAATAGAACACATTTTATTTAAAAGGTTAAATTTGGAACAATCATCTTTT
CTGCACATGCTTGGTGCTGGGAAGCAATTTAAATAACAGTGGCAAATGAG
AAAATGAGGTAAAATTACACACACCACCAATTTTTTAAATGGCAAGTATT
ATAATTAATACCCAACTTCCTTTATAACCCACATCACCTTAGAGTGACTA
TTANGTATCTCCCGGGACTGGAGCTTAAGTGTAGNTGTTCAATTGCATTA
TATTGAGATAGTGCAGGGACTGAAATGGTAGTAACATGATTCCAACAGGT
CTAAACTTTTTAAATGAAGGGCTTGTATTAAAAACTGGAAAATAAGTTGG
CCCCTTGGATGGAAAGGCCTTTCTTTCCCGGAACGCAAAAAAAAAAAAGG
GGCTGTGAACAAAAATTCTGATGGAAAAAAAACCTGGGGTTTTTAATTCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_c20.b1 MSMg01no135_c20.b1 CHROMAT_FILE:
MSMg01no135_c20.b1 PHD_FILE: MSMg01no135_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:14 2005
         (291 letters)



>mm_chr1_62199259_62199949
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgctctcaactttccagccaggacccagatctttaccgttttcagtttggagcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgctctcaactttccagccaggacccagatctttaccgttttcagtttggagcaga 260

                                                                       
Query: 61  agagtaactgagatagccatggctctttatctgacatcttgttgtcgtgaatgttaaaca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 agagtaactgagatagccatggctctttatctgacatcttgttggcgtgaatgttaaaca 320

                                                                       
Query: 121 ataggaacatgtttacaatcatgttataataggaacatgtttccatgaaggtggtgcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggaacatgtttacaatcatgttataataggaacatgtttccatgaaggtggtgcttg 380

                                                                       
Query: 181 cttcaagttcatcatttcctctggcaatttgtctctctctttgggattaaaggagccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcaagttcatcatttcctctggcaatttgtctctctctttgggattaaaggagccaat 440

                                                              
Query: 241 atttgttcactgatattattttcatctttacaaacacttgttagctccact 291
           | |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aattgttcacggatattattttcatctttacaaatacttgttagctccact 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no135_c20.g1 MSMg01no135_c20.g1 CHROMAT_FILE:
MSMg01no135_c20.g1 PHD_FILE: MSMg01no135_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:14 2005
         (359 letters)



>mm_chr1_62319207_62319965
          Length = 759

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagaacactgaaataaactatttttaaaaacactgtggaaaaatccaaatggatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttagaacactgaaataaactatttttaaaaacactgtggaaaaatccaaatggatgaca 500

                                                                       
Query: 61  ggcacaaaaattaggggtctttctccaaatattctctgacacagatgcctatctttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggcacaaaaattaggggtctttctccaaatattctctgacacagatgcctatctttagga 440

                                                                       
Query: 121 tcaacgacaaatgaacaaacataatgaaaaagagagggtgcggcaatgacttaattaata 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 tcaacgacaaatgaacaaacataatggaaaagagagggtgcggcaatgacttaattaata 380

                                                                       
Query: 181 gaacacattttatttaaaaggttaaatttggaacaatcatcttttctgcacatgcttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaacacattttatttaaaaggttaaatttggaacaatcatcttttctgcacatgcttggt 320

                                                                       
Query: 241 gctgggaagcaatttaaataacagtggcaaatgagaaaatgaggtaaaattacacacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctgggaagcaatttaaataacagtggcaaatgagaaaatgaggtaaaattacacacacc 260

                                                                      
Query: 301 accaattttttaaatggcaagtattataattaatacccaacttcctttataacccacat 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 accaattttttaaatggcaagtattataattaatacccaacttcctttataacccacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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