BAC Information

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BAC

Clone NameMSMg01-135F18
Chromosome1 (Build37)
Map Location 151,180,273 - 151,180,599
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135F18.T7 (MSMg01no135_f18.b1)MSMg01-135F18.TJ (MSMg01no135_f18.g1)
ACCAG341841AG341842
length724730
length of high quality
(start - end)
327 (316 - 642)651 (61 - 711)
definitionCHROMAT_FILE: MSMg01no135_f18.b1 PHD_FILE: MSMg01no135_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:28 2005CHROMAT_FILE: MSMg01no135_f18.g1 PHD_FILE: MSMg01no135_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCCTATATTCCGAGCTGCGCGGAATTCNAAATCGTTT
CCCAAAAAAGTGTCTGTTACCTTAGCAAGGAGCACCAAACCACTGAGGAT
TAATTGAAAGCAGGTTAGAAAACTGAATGACTGCTCAACCACAAATCAAC
TAACTGATCATCTGTTCCTATCTCAGCAGACACTGAGTCTTCTGTGTCTA
AGGAGATTAAAAGTCCTGTGGGCTTCAAACTCCATTGTCTGGTGGCAGCA
ATGGCATCCTCTCTGGGAGCAGCAATGGCATCCTCAAACACACTCAATAA
GCAATCCNTTGCTGAGGATGCTGAAAGTGCTGCCCTCTTCACTGTGTTTC
TTTTTGCTTCTACTGGGTTCCAGCATCATTGTCTGGCCATATCCTGCAAA
TAAAACACTGGAAGGTTATTATTCCTGGCATGTTACAAGTTCACGAAGAA
CTGTTGTTTAACCTTACTTACATTTGTTTCTTCAACAAGTGGCCCACCAA
TGACAACAAAGCTTTCTCTAATTAACAATGACAACAGTCATTTCTCTAAT
TACAAGCACCAAATGGGATCAGTGCTGGTTGCCCGCTTTTTAGCGCCTCA
CTACTGAACAGAAAAACAGGAGCAGAAAATCCTGGACCTGGTTGTCAGGA
GACAGACTACTAATGTGGCATAGAAACCAAGAGGGAGGAAGAATGAAAGA
ACCTTTGAGCATACAGAGTCCACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAATTGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTC
TAAGTGGATCAAAGACCTCCACTTAAAACTATATACACCGAAATGTGTAG
AGGAGAAAATCAAGAAAAGCATCGAAGATATGGGCACAGGGGGGATATTC
CTGAACAGAACAGCAATGGCTTGTCTATAAGATCAAGAATCAACAAATGG
GACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGATACTGTCAATAA
GACAAAAAGGCCACTAAGAGATTTGGAAAGTATTTTTACCAATCCTAAAT
CTGTTAGAGGACTAATATCCAATATATACAAAGAGCTCAAGAAGCTGGAC
TCCAGAAATTCAAATAATCCTATTAAAAAGTGGGGTACAGAGTTAAACAA
AGTGTTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAT
GTTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATAGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGTGAGGATGTAGAGAAAGAGGAACGCTCCTCCATTGCTGGT
CGGATTGCAAGCATTGTACAACCACTCTGGAAATCACTCTTGTGGTTCCT
TAGAAGANNAAAAAGATAGAAAGAGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_f18.b1 MSMg01no135_f18.b1 CHROMAT_FILE:
MSMg01no135_f18.b1 PHD_FILE: MSMg01no135_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:28 2005
         (327 letters)



>mm_chr1_151180073_151180799
          Length = 727

 Score =  571 bits (295), Expect = e-167
 Identities = 319/327 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatgctgaaagtgctgccctcttcactgtgtttctttttgcttctactgggttccagca 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ggatgctgaaagtgctgccctcttcactgtgtttctttttgtttctactgggttccagca 260

                                                                       
Query: 61  tcattgtctggccatatcctgcaaataaaacactggaaggttattattcctggcatgtta 120
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tcattgtctggccataccctgcaaataaaacactggaaggttattattcctggcatgtaa 320

                                                                       
Query: 121 caagttcacgaagaactgttgtttaaccttacttacatttgtttcttcaacaagtggccc 180
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 caagttcaccaagaactgttgtttaaccttacttacatttgtttctccaacaagtggccc 380

                                                                       
Query: 181 accaatgacaacaaagctttctctaattaacaatgacaacagtcatttctctaattacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaatgacaacaaagctttctctaattaacaatgacaacagtcatttctctaattacaa 440

                                                                       
Query: 241 gcaccaaatgggatcagtgctggttgcccgctttttagcgcctcactactgaacagaaaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gcaccaaatgggatcagtgctggttgcctgctttttagcgcctcactactgaacagaaaa 500

                                      
Query: 301 acaggagcagaaaatcctggacctggt 327
           ||| |||||||||||| ||||||||||
Sbjct: 501 acaagagcagaaaatcatggacctggt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)