BAC Information

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BAC

Clone NameMSMg01-135H04
Chromosome1 (Build37)
Map Location 176,302,917 - 176,303,428
singlet/doubletsinglet
Overlap genenone
Upstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274
Downstream geneGA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135H04.T7 (MSMg01no135_h04.b1)MSMg01-135H04.TJ (MSMg01no135_h04.g1)
ACCAG341904AG341905
length704705
length of high quality
(start - end)
613 (40 - 652)594 (68 - 661)
definitionCHROMAT_FILE: MSMg01no135_h04.b1 PHD_FILE: MSMg01no135_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:35 2005CHROMAT_FILE: MSMg01no135_h04.g1 PHD_FILE: MSMg01no135_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCAGTCCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTT
AGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTC
TACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCTGTAG
TAAAGCCTTTAGGTCCGGCATGGTGATTCCACCAGAGGTTCTTTTATCCT
TGAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTAAATTTCTGCATTATGGACATTATATGGTG
ATCACAATCATTGTCTCACACCTGCACAAGATCAAGGCAGTCCAAATCCC
AGCACATATAGAGCTGATGATCATTAGACATGATTATATTCTGATGATCT
ATTGGCAATAAATAGCTTCTGGAAAAGGGAAAATTCCTTCTTTATTAAAT
ATTTGGCCACTGGTATATTTTCCATGCTCCAGGGGGAATACCCATGCAAT
ATGGGAGCTCTAACTGGATTTAGTGGACTATCAAGAAAGGAAGATGGGAG
AGAGTCTTGGGATCTATGTGTGGGGAGTTGGAAGATAGAAATGGAAGATA
GAAACAACTATACTCCATTGCATGCATATATGCAATTTCCAAAAACTATG
GAAAAGTACCCCAGGATTCTCAGGGTTAGTAATGACAAGAACACGTGGTG
ATATTCACACCTAATACAGGCATCCATGAGATCATGCTCATTTTCTGAAT
GCTCAGATCATCATTAAGAAAGAGACAAAGGATGCAAAACCACCGTGTCA
ATTTTTCAGTAACTATGATCTATTTAATCTCATCCTCCCCACTACCACAA
TATGATGCCTGTCTTTATATTAATATATTCAATTTTATATTATACACAGT
TATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_h04.g1 MSMg01no135_h04.g1 CHROMAT_FILE:
MSMg01no135_h04.g1 PHD_FILE: MSMg01no135_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:35 2005
         (594 letters)



>mm_chr1_176302435_176303428
          Length = 994

 Score =  990 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Minus

                                                                       
Query: 83  cagcacatatagagctgatgatcattagacatgattatattctgatgatctattggcaat 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 cagcacatatagagctgatgatcattagacatgattatattctgatgatctattggcaat 935

                                                                       
Query: 143 aaatagcttctggaaaagggaaaattccttctttattaaatatttggccactggtatatt 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 aaatagcttctggaaaagggaaaattccttctttattaaatatttggccactggtatatt 875

                                                                       
Query: 203 ttccatgctccagggggaatacccatgcaatatgggagctctaactggatttagtggact 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ttccatgctccagggggaatacccatgcaatatgggagctctaactggatttagtggact 815

                                                                       
Query: 263 atcaagaaaggaagatgggagagagtcttgggatctatgtgtggggagttggaagataga 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 atcaagaaaggaagatgggagagagtcttgggatctatgtgtggggagttggaagataga 755

                                                                       
Query: 323 aatggaagatagaaacaactatactccattgcatgcatatatgcaatttccaaaaactat 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aatggaagatagaaacaactatactccattgcatgcatatatgcaatttccaaaaactat 695

                                                                       
Query: 383 ggaaaagtaccccaggattctcagggttagtaatgacaagaacacgtggtgatattcaca 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggaaaagtaccccaggattctcagggttagtaatgacaagaacacgtggtgatattcaca 635

                                                                       
Query: 443 cctaatacaggcatccatgagatcatgctcattttctgaatgctcagatcatcattaaga 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cctaatacaggcatccatgagatcatgctcattttctgaatgctcagatcatcattaaga 575

                                                                       
Query: 503 aagagacaaaggatgcaaaaccaccgtgtcaatttttcagtaactatgatctatttaatc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aagagacaaaggatgcaaaaccaccgtgtcaatttttcagtaactatgatctatttaatc 515

                                           
Query: 563 tcatcctccccactaccacaatatgatgcctg 594
           ||||||||||||||||||||||||||||||||
Sbjct: 514 tcatcctccccactaccacaatatgatgcctg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)