Query= MSMg01no135_j16.b1 MSMg01no135_j16.b1 CHROMAT_FILE:
MSMg01no135_j16.b1 PHD_FILE: MSMg01no135_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:46 2005
(667 letters)
>mm_chr1_19781406_19782472
Length = 1067
Score = 1170 bits (605), Expect = 0.0
Identities = 650/665 (97%), Gaps = 2/665 (0%)
Strand = Plus / Plus
Query: 4 ggaattcccagccttctctcagtctttggtaatgaaatgaaggtctggaaagagtctatt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagccttctatcagtctttggtaatgaaatgaaggtctggaaagagtctatt 263
Query: 64 cactaaaagatttattgttcttaagatttagtaaacagtgaaaatcaaaactgggagaga 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactacaagatttattgttcttaagatttagtaaacagtgaaaatcaaaactgggagaga 323
Query: 124 cccatcaacaactgctaaatttcaattaaaaatatgtttatatatttatttttgcattgg 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 cccatcaacaactgctaaatttcaattaaaaatatgtttagatatttatttttgcattgg 383
Query: 184 tgtctacagataaggacaatgtaatgtatatttcaaaaaggctaaaaggagacatttcaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 tgtctacagataaggacaatgtaatgtatatttcaaaaaggctaaaaggagaaatttcaa 443
Query: 244 atggttccactacaaagaaatgatgattattttaataagtacattttcaccttgatctga 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atggttccagtacaaagaaatgatgattattttaataagtacattttcaccttgatctga 503
Query: 304 atattatatggacatgtatagaaatatacatatccataattttcatgtcagttaaaaata 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 atattatatggacatgtatagaaatatacatatccataaatttcatgtcagttaaaaata 563
Query: 364 gacagaaagaaggaaggaaggaagacagagggagtggaggaaggaagattaaagaatatc 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gacagaaagaaggaagtaaggaagacagagggagtggaggaaggaagattaaagaatatc 623
Query: 424 aggaagaaaatacaggagtagtagaaggctggggttgtcattcaattcatagagtgcttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 624 aggaagaaaatacaggagtagtagaaggctggggttgtcattcaattcatacagtgcctg 683
Query: 484 cttagtatgtatgaaaccctccatttaatctccagcaatgcataccaagacatggtgcta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttagtatgtatgaaaccctccatttaatctccagcaatgcataccaagacatggtgcta 743
Query: 544 catgccaagtaatatcaacactcaaggcatacagacaaaatgatcacaaatgcaaagcca 603
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 744 catgccaaataatatcaacactcagggcatacagacaaaatgatcacaaatgcaaagcca 803
Query: 604 tcatccaaaattttc-tttcaaaacaactaagaaatacatgaaggatcatagtaataatg 662
|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 804 tcatcccaa-ttttcctttcaaaacaactaagaaatacatgaaggatcatagtaataacg 862
Query: 663 acaaa 667
|||||
Sbjct: 863 acaaa 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_j16.g1 MSMg01no135_j16.g1 CHROMAT_FILE:
MSMg01no135_j16.g1 PHD_FILE: MSMg01no135_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:46 2005
(538 letters)
>mm_chr1_19960560_19961497
Length = 938
Score = 882 bits (456), Expect = 0.0
Identities = 494/516 (95%), Gaps = 16/516 (3%)
Strand = Plus / Minus
Query: 39 tatctctttacagatgagggaatggggtcaaagaatatagggtaaggccgttactcagga 98
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 tatctctttacagatgaaggaatggggtcaaagaatatagggtaaggccgttactcagga 879
Query: 99 tcgtagactcagaaaactgagagaagtgaggggaacagggatagtggacttaaactaggg 158
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tcgtagactaagaaaactgagagaagtgaggggaacagggatagtggacttaaactaggg 819
Query: 159 ggcatggtccagtgcctccggcaccctcctaacatcatgtgc-------------g---g 202
|||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 818 ggcatggtccagtgcctccggcaccctcctaacatcatgtgctgtctgtctgtctgtctg 759
Query: 203 tctgtctgtctgtctgtctgaaaaggctgctgagactcccatagggagtctttcagtcgg 262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 758 tctgtctgtctgtctgtctgaaaaggctgctgagactcccatagggagtctttcagtccg 699
Query: 263 ttcttagatgtcttctcttctgcccccaacagaactgctatggaaaacaataatggtatt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttcttagatgtcttctcttctgcccccaacagaactgctatggaaaacaataatggtatt 639
Query: 323 ggcagtttgtctacctgtttgctgggaataaacattccttcatccaggagctcctgagac 382
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggcagtttgtctacctgtttgttgggaataaacattccttcatccaggagctcctgagac 579
Query: 383 acagggtgggcaagagttccagataacctcccttgccttatcctgttagaaacaaaagag 442
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 acagggtaggcaagagttccagataacctcccttgccttatcctgttagaaacaaaagag 519
Query: 443 agaaagggactcacacggagtactttcagtgtgaagtgtaggagttagaaataagctatt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 518 agaaagggactcacacggagtactttcagtgtgaagtgtaggagttagaaataaggtatt 459
Query: 503 atctttttagatactgatgctgggggatgaggggat 538
||||||||||||||||||||||||||||||||||||
Sbjct: 458 atctttttagatactgatgctgggggatgaggggat 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
