BAC Information

Click to search

BAC

Clone NameMSMg01-135K21
Chromosome1 (Build37)
Map Location 44,489,229 - 44,489,590
singlet/doubletsinglet
Overlap genenone
Upstream geneNck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619
Downstream geneTxn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135K21.T7 (MSMg01no135_k21.b1)MSMg01-135K21.TJ (MSMg01no135_k21.g1)
ACCAG342078AG342079
length696697
length of high quality
(start - end)
362 (331 - 692)622 (76 - 697)
definitionCHROMAT_FILE: MSMg01no135_k21.b1 PHD_FILE: MSMg01no135_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:52 2005CHROMAT_FILE: MSMg01no135_k21.g1 PHD_FILE: MSMg01no135_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCATTTTGTACCCGACACCTACTCTAGGCTCGGGGCCTGTCCTTA
AGTGTGTTTAATAAACTCAGTGAAGTAACATTGGTGAAAATGATGTTTTT
TTTTTTCATTTGTAAATTGTTATCAATTACAGATAGCTTTTTGCTTACCA
GTGGTAGCTTGTGTCCACTTCCAGGCTGCAAAGCTTCAAGTACAATGTGG
GTTGTATTACTGAGAGGGAAAGGTGGTTTGCTAAATGTTAAAGGAAAAGA
TAACTTGTTACAGCCTTTGGAGAATCAAAACACAAAACAAAACAAAACTA
CCATGTCAACAACACAGAGCTGCTGAAGTTCTAAGTGACAGCTCCTAGGC
TCCATCAATTTGCATGTCAGTGAAATGTACATTCATGGAGTCTTCTATAA
TTAGAACTGGGATTACAATAAAGTCAGTAGTACTGAATTTCTTGTCTTCA
CTTAGTAGAGACTAAGGAAATGGAAGCTGTGCCCACAATGTTATTAACAA
TGCCCTCATCTCAGGCAGGATATTATTTGATAAGGGCTATAGCAAATCTG
AGTAATGATAAACATGGTTCCCTCCTCCCTTCCTTCCTTTGCTAAACCCT
TACATTCCTATATCTAGACACCAAGGTCTATTCCCTTTGTTATACC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGTCTTTAATTTCTTTCTTT
ATTTCTTCTCTGACAAAGTTATCATTGAGTAGACAATTGTTCAGTTTCCG
TGGGTATGTGGGTTTTCTGTTGTTTCTGTTGTTATTTAACTCTAGCCTTA
CTTTCTACAGCTATAAATGACTTCAGCGAAGAGGATGGATATAAAATTAA
CTCAAACAAATCAGTAGCCTTCCTTTATACAAATGATAAACAGGCTGAAA
AAGAAAATAGGGAAACAACATCCTTCACAATAGTCGCAAATAATATAAAA
TATCCTGGCATATCAAAAAAGACCTCAGAAACTGGAGAGATCTTCCATGT
TAATGGATTGTTAGAATTAATATAGTAAAAAGGGCCATCCTACCAAAAGC
AATCTACATATTCAGTGCAATTCCCATCAAAATTGCAAGACAATCTTCAA
AGACATGGAAAGAACAATTCTCAATTTCTTACGGAAAAACAAAAAACCTA
GGATATCAAAAACAATTCTCAAAAATAAAAGAACTTATGGGAGAATCACC
ATCTCTGACCTCAAGCTCTACTACAGAGCAATAGTAATAAATGCATGGCA
TTGGTACAGAGCCAGACAGGTTTATCAATGTAGTAAAGTTGAACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_k21.b1 MSMg01no135_k21.b1 CHROMAT_FILE:
MSMg01no135_k21.b1 PHD_FILE: MSMg01no135_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:52 2005
         (362 letters)



>mm_chr1_44489029_44489790
          Length = 762

 Score =  685 bits (354), Expect = 0.0
 Identities = 360/362 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaaaacaaaacaaaactaccatgtcaacaacacagagctgctgaagttctaagtgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaaaacaaaacaaaactaccatgtcaacaacacagagctgctgaagttctaagtgaca 260

                                                                       
Query: 61  gctcctaggctccatcaatttgcatgtcagtgaaatgtacattcatggagtcttctataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcctaggctccatcaatttgcatgtcagtgaaatgtacattcatggagtcttctataa 320

                                                                       
Query: 121 ttagaactgggattacaataaagtcagtagtactgaatttcttgtcttcacttagtagag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagaactgggattacaataaattcagtagtactgaatttcttgtcttcacttagtagag 380

                                                                       
Query: 181 actaaggaaatggaagctgtgcccacaatgttattaacaatgccctcatctcaggcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaaggaaatggaagctgtgcccacaatgttattaacaatgccctcatctcaggcagga 440

                                                                       
Query: 241 tattatttgataagggctatagcaaatctgagtaatgataaacatggttccctcctccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattatttgataagggctatagcaaatctgagtaatgataaacatggttccctcctccct 500

                                                                       
Query: 301 tccttcctttgctaaacccttacattcctatatctagacaccaaggtctattccctttgt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccctcctttgctaaacccttacattcctatatctagacaccaaggtctattccctttgt 560

             
Query: 361 ta 362
           ||
Sbjct: 561 ta 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)