BAC Information

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BAC

Clone NameMSMg01-135N14
Chromosome1 (Build37)
Map Location 176,771,168 - 176,922,675
singlet/doubletdoublet
Overlap geneGrem2
Upstream geneLOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135N14.T7 (MSMg01no135_n14.b1)MSMg01-135N14.TJ (MSMg01no135_n14.g1)
ACCAG342203AG342204
length719724
length of high quality
(start - end)
682 (38 - 719)620 (63 - 682)
definitionCHROMAT_FILE: MSMg01no135_n14.b1 PHD_FILE: MSMg01no135_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:04 2005CHROMAT_FILE: MSMg01no135_n14.g1 PHD_FILE: MSMg01no135_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,921,992 - 176,922,675)(176,771,168 - 176,771,800)
sequence
CGGCGCTATACACTCCTATTTCAGAGGAGGGCGGATTCACTCTAAATACC
ACTGGAAAATAAATGTGGTGGGTAAGATGATAGCAAGATAACCAGAGTGC
TGCTTTTAAATCAAGTAAGAAGAGTTATTGTCCTAAGGGAACGTGAAAAG
TATCATTCCGAATAAGAATAGATTATTTGAAGCAGTCTAGCCTTAGCCCA
TGAGCATAGATGAGTCCAAAATGCAGGACCTGGACATATTCTTCTCATTT
GTACATTGCATGGGAATTGCTTTTTTAACTTTGAAACATCCTGTTGTCTA
AGTGATATTAACAATAATCCCATGGTGAGCTGTCTATAAGCCACTGCACT
CACTAAGTTTACAGGGAGGAAGTGGCGTTAACACTGGATTTTAACTCCAG
CGGCTTTCTTGGATTGGAAAGACCCCAACACCACAATATCCCATTCAGAG
TCCAAGTATGCTGACTGTGGAATCCCCCCAAAAAGATCATTGCTCACAAT
AGACTTTTGTATTCCTCAGAGGAATCCAATACTCCTGCCAAAGTATGGAT
TTTCAGGGTTTCAGAGACTGAGGAAGCCTTTAGGAATCTTTAAGCTCCAG
ACTTAAGTGAGAAAAGCTTTAGCTATCAGAAGGCAGTCCCCTGGTCTGCA
CAACACAGCTAAGTACACTTAGGCAGTCCTCTGGTCTGCAGGAGACAACT
AAGTACACTTAACAAAGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTTGATCTCCAGATCACAGATGGGGTAGCTTGCTATTG
AAACGAGGCCCCCCTGGCAGCCTTAAACTGAGGCAAACTGTGGCCCATGG
GGGCCACACCAAATCTGAGGTTCTGTTTTGTAAATAAGCTTGTGCCACAC
TCTCTTTTACCTGTTGCCTGGGGCTGCCTTTGTGCTGTAAGGGCAGAATG
CGTAGTGAAGTCAGTGACTATGATGCACACAAAGTCAAAAAATATATTTT
TGGGGCTGGATAGATGGCTCAGCGAGTTAAGAGCACTGACTGCTCTTCCG
GAGGTTTTGAGTTCAAGTCCCAGCAATCACATGGTGGCTCACAACCATCT
GTAATGAAATCGGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTG
TACTTACATATAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AGATAGATAAATAAATAAATGAATGAATGAATGAATGAATGAATGAATGA
ATGAATGAATATTTTCTTGTGGCCTTTTACAGAAAAGCTCAGACAAGTCT
TGCCCCAAAGCCCGCCTGTCTAACTTAGTTGTTGCTTTTTTTAGGGTTCA
GTTCTTCAGCCTTCAAAATTTCTAACTGTTCAATGTTTCAAACAGGGAGG
CACAGAAAACAGAATAAATCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_n14.b1 MSMg01no135_n14.b1 CHROMAT_FILE:
MSMg01no135_n14.b1 PHD_FILE: MSMg01no135_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:04 2005
         (682 letters)



>mm_chr1_176921792_176922875
          Length = 1084

 Score = 1268 bits (656), Expect = 0.0
 Identities = 677/684 (98%), Gaps = 2/684 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctaaa-taccactgg-aaaataaatgtggtgggtaagatgatagcaagataaccag 58
           |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 cactctaaacaaccactggaaaaataaatgtggtgggtaagatgatagcaagataaccag 825

                                                                       
Query: 59  agtgctgcttttaaatcaagtaagaagagttattgtcctaagggaacgtgaaaagtatca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 agtgctgcttttaaatcaagtaagaagagttattgtcctaagggaacgtgaaaagtatca 765

                                                                       
Query: 119 ttccgaataagaatagattatttgaagcagtctagccttagcccatgagcatagatgagt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttccgaataagaatagattatttgaagcagtctagccttagcccatgagcatagatgagt 705

                                                                       
Query: 179 ccaaaatgcaggacctggacatattcttctcatttgtacattgcatgggaattgcttttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ccaaaatgcaggacctggacatattcttctcatttgtacattgcatgggaattgcttttt 645

                                                                       
Query: 239 taactttgaaacatcctgttgtctaagtgatattaacaataatcccatggtgagctgtct 298
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 644 taactttgaaacatcctgttgtctaagtgatacaaacaataatcccatggtgagctgtct 585

                                                                       
Query: 299 ataagccactgcactcactaagtttacagggaggaagtggcgttaacactggattttaac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ataagccactgcactcactaagtttacagggaggaagtggcgttaacactggattttaac 525

                                                                       
Query: 359 tccagcggctttcttggattggaaagaccccaacaccacaatatcccattcagagtccaa 418
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tccagtggctttcttggattggaaagaccccaacaccacaatatcccattcagagtccaa 465

                                                                       
Query: 419 gtatgctgactgtggaatccccccaaaaagatcattgctcacaatagacttttgtattcc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtatgctgactgtggaatccccccaaaaagatcattgctcacaatagacttttgtattcc 405

                                                                       
Query: 479 tcagaggaatccaatactcctgccaaagtatggattttcagggtttcagagactgaggaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcagaggaatccaatactcctgccaaagtatggattttcagggtttcagagactgaggaa 345

                                                                       
Query: 539 gcctttaggaatctttaagctccagacttaagtgagaaaagctttagctatcagaaggca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcctttaggaatctttaagctccagacttaagtgagaaaagctttagctatcagaaggca 285

                                                                       
Query: 599 gtcccctggtctgcacaacacagctaagtacacttaggcagtcctctggtctgcaggaga 658
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 284 gtcccctggtctgcacaacacagctaagtacacttaggcagtcccctggtctgcaggaga 225

                                   
Query: 659 caactaagtacacttaacaaagat 682
           ||||||||||||||||||||||||
Sbjct: 224 caactaagtacacttaacaaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1084
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1074
Effective search space:   721728
Effective search space used:   721728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no135_n14.g1 MSMg01no135_n14.g1 CHROMAT_FILE:
MSMg01no135_n14.g1 PHD_FILE: MSMg01no135_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:04 2005
         (620 letters)



>mm_chr1_176770981_176772000
          Length = 1020

 Score = 1154 bits (597), Expect = 0.0
 Identities = 619/633 (97%), Gaps = 13/633 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgatctc-cagatcacagatggggtagcttgctattgaaacgaggcccccctggcagc 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cttgatctcacagatcacagatggggtagcttgctattgaaacgaggcccccctggcagc 247

                                                                       
Query: 60  cttaaactgaggcaaactgtggcccatgggggccacaccaaatctgaggttctgttttgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttaaactgaggcaaactgtggcccatgggggccacaccaaatctgaggttctgttttgt 307

                                                                       
Query: 120 aaataagcttgtgccacactctcttttacctgttgcctggggctgcctttgtgctgtaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaataagcttgtgccacactctcttttacctgttgcctggggctgcctttgtgctgtaag 367

                                                                       
Query: 180 ggcagaatgcgtagtgaagtcagtgactatgatgcacacaaagtcaaaaaatatattttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcagaatgcgtagtgaagtcagtgactatgatgcacacaaagtcaaaaaatatattttt 427

                                                                       
Query: 240 ggggctggatagatggctcagcgagttaagagcactgactgctcttccggaggttttgag 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggggctggagagatggctcagcgagttaagagcactgactgctcttccggaggttttgag 487

                                                                       
Query: 300 ttcaagtcccagcaatcacatggtggctcacaaccatctgtaatgaaatcggatgccctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttcaagtcccagcaatcacatggtggctcacaaccatctgtaatgaaatcggatgccctc 547

                                                                       
Query: 360 ttctggagtgtctgaagacagctacagtgtacttacatataataaataaataaataaata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttctggagtgtctgaagacagctacagtgtacttacatataataaataaataaataaata 607

                                                                       
Query: 420 aataaataaataaataaata--------gatagataaataaataaatgaatgaatgaatg 471
           ||||||||||||||||||||        ||||||||||||||||||||||||||||||||
Sbjct: 608 aataaataaataaataaataaataaatagatagataaataaataaatgaatgaatgaatg 667

                                                                       
Query: 472 aatgaatgaatgaatgaatgaatgaat----attttcttgtggccttttacagaaaagct 527
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 668 aatgaatgaatgaatgaatgaatgaatgaatattttcttgtggccttttacagaaaagct 727

                                                                       
Query: 528 cagacaagtcttgccccaaagcccgcctgtctaacttagttgttgctttttttagggttc 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cagacaagtcttgccccaaagcccgcctgtctaacttagttgttgctttttttagggttc 787

                                            
Query: 588 agttcttcagccttcaaaatttctaactgttca 620
           |||||||||||||||||||||||||||||||||
Sbjct: 788 agttcttcagccttcaaaatttctaactgttca 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)