Query= MSMg01no135_n14.b1 MSMg01no135_n14.b1 CHROMAT_FILE:
MSMg01no135_n14.b1 PHD_FILE: MSMg01no135_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:04 2005
(682 letters)
>mm_chr1_176921792_176922875
Length = 1084
Score = 1268 bits (656), Expect = 0.0
Identities = 677/684 (98%), Gaps = 2/684 (0%)
Strand = Plus / Minus
Query: 1 cactctaaa-taccactgg-aaaataaatgtggtgggtaagatgatagcaagataaccag 58
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 cactctaaacaaccactggaaaaataaatgtggtgggtaagatgatagcaagataaccag 825
Query: 59 agtgctgcttttaaatcaagtaagaagagttattgtcctaagggaacgtgaaaagtatca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 agtgctgcttttaaatcaagtaagaagagttattgtcctaagggaacgtgaaaagtatca 765
Query: 119 ttccgaataagaatagattatttgaagcagtctagccttagcccatgagcatagatgagt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttccgaataagaatagattatttgaagcagtctagccttagcccatgagcatagatgagt 705
Query: 179 ccaaaatgcaggacctggacatattcttctcatttgtacattgcatgggaattgcttttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ccaaaatgcaggacctggacatattcttctcatttgtacattgcatgggaattgcttttt 645
Query: 239 taactttgaaacatcctgttgtctaagtgatattaacaataatcccatggtgagctgtct 298
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 644 taactttgaaacatcctgttgtctaagtgatacaaacaataatcccatggtgagctgtct 585
Query: 299 ataagccactgcactcactaagtttacagggaggaagtggcgttaacactggattttaac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ataagccactgcactcactaagtttacagggaggaagtggcgttaacactggattttaac 525
Query: 359 tccagcggctttcttggattggaaagaccccaacaccacaatatcccattcagagtccaa 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tccagtggctttcttggattggaaagaccccaacaccacaatatcccattcagagtccaa 465
Query: 419 gtatgctgactgtggaatccccccaaaaagatcattgctcacaatagacttttgtattcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtatgctgactgtggaatccccccaaaaagatcattgctcacaatagacttttgtattcc 405
Query: 479 tcagaggaatccaatactcctgccaaagtatggattttcagggtttcagagactgaggaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcagaggaatccaatactcctgccaaagtatggattttcagggtttcagagactgaggaa 345
Query: 539 gcctttaggaatctttaagctccagacttaagtgagaaaagctttagctatcagaaggca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcctttaggaatctttaagctccagacttaagtgagaaaagctttagctatcagaaggca 285
Query: 599 gtcccctggtctgcacaacacagctaagtacacttaggcagtcctctggtctgcaggaga 658
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 284 gtcccctggtctgcacaacacagctaagtacacttaggcagtcccctggtctgcaggaga 225
Query: 659 caactaagtacacttaacaaagat 682
||||||||||||||||||||||||
Sbjct: 224 caactaagtacacttaacaaagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1084
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1074
Effective search space: 721728
Effective search space used: 721728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_n14.g1 MSMg01no135_n14.g1 CHROMAT_FILE:
MSMg01no135_n14.g1 PHD_FILE: MSMg01no135_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:04 2005
(620 letters)
>mm_chr1_176770981_176772000
Length = 1020
Score = 1154 bits (597), Expect = 0.0
Identities = 619/633 (97%), Gaps = 13/633 (2%)
Strand = Plus / Plus
Query: 1 cttgatctc-cagatcacagatggggtagcttgctattgaaacgaggcccccctggcagc 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cttgatctcacagatcacagatggggtagcttgctattgaaacgaggcccccctggcagc 247
Query: 60 cttaaactgaggcaaactgtggcccatgggggccacaccaaatctgaggttctgttttgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttaaactgaggcaaactgtggcccatgggggccacaccaaatctgaggttctgttttgt 307
Query: 120 aaataagcttgtgccacactctcttttacctgttgcctggggctgcctttgtgctgtaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaataagcttgtgccacactctcttttacctgttgcctggggctgcctttgtgctgtaag 367
Query: 180 ggcagaatgcgtagtgaagtcagtgactatgatgcacacaaagtcaaaaaatatattttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcagaatgcgtagtgaagtcagtgactatgatgcacacaaagtcaaaaaatatattttt 427
Query: 240 ggggctggatagatggctcagcgagttaagagcactgactgctcttccggaggttttgag 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggggctggagagatggctcagcgagttaagagcactgactgctcttccggaggttttgag 487
Query: 300 ttcaagtcccagcaatcacatggtggctcacaaccatctgtaatgaaatcggatgccctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttcaagtcccagcaatcacatggtggctcacaaccatctgtaatgaaatcggatgccctc 547
Query: 360 ttctggagtgtctgaagacagctacagtgtacttacatataataaataaataaataaata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttctggagtgtctgaagacagctacagtgtacttacatataataaataaataaataaata 607
Query: 420 aataaataaataaataaata--------gatagataaataaataaatgaatgaatgaatg 471
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 608 aataaataaataaataaataaataaatagatagataaataaataaatgaatgaatgaatg 667
Query: 472 aatgaatgaatgaatgaatgaatgaat----attttcttgtggccttttacagaaaagct 527
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 668 aatgaatgaatgaatgaatgaatgaatgaatattttcttgtggccttttacagaaaagct 727
Query: 528 cagacaagtcttgccccaaagcccgcctgtctaacttagttgttgctttttttagggttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cagacaagtcttgccccaaagcccgcctgtctaacttagttgttgctttttttagggttc 787
Query: 588 agttcttcagccttcaaaatttctaactgttca 620
|||||||||||||||||||||||||||||||||
Sbjct: 788 agttcttcagccttcaaaatttctaactgttca 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|